Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N09
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.9  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   7.8  

>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 112 LKFILLKFTVXAXLFIDTSTYFNTSVLKTAIQKCIL 219
           +K+I+  F +   L ++ +TY  T + K ++ + +L
Sbjct: 4   VKYIIFSFALAPLLLVNANTYNFTQIQKRSVNQAVL 39


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 532 LRTSGN*TLFKFVKSFKNSLIHRSKNITYS 443
           L+ SGN T+ +F+K F  +++ +S   T S
Sbjct: 600 LKLSGNETIERFIKKFTQAVLFQSTKSTAS 629


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +3

Query: 438 DKEYVIFFDLWIREFLKLFTNLNNV*LPDVRSELQVG-SYE---IQKLVGTSEMSIAFIQ 605
           D++ ++ FD+ I+E+L L     NV + ++  E+  G +Y     +K  G S  +I    
Sbjct: 115 DRQLLVEFDVVIKEYLNLSEGYRNV-ISNITKEMGDGMAYYASLAEKNDGFSVETIEDFN 173

Query: 606 KYTH 617
           KY H
Sbjct: 174 KYCH 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,047
Number of Sequences: 5004
Number of extensions: 42173
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)