Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N08
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 119 3e-28
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 93 3e-20
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 62 7e-11
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 32 0.084
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 29 0.59
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 27 2.4
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 27 3.1
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 4.2
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.2
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 26 5.5
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 26 5.5
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 7.3
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 119 bits (287), Expect = 3e-28
Identities = 51/83 (61%), Positives = 68/83 (81%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
+F C +EQ+DNEL+ LE+IH++VE LDKYFG+VCELD+IFNFEKAY++++EL+L GELQE
Sbjct: 67 FFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQE 126
Query: 475 TSKKNVLKAIAAQDLLQEEETPQ 407
+SK NVL A+ A D E + Q
Sbjct: 127 SSKTNVLSAVLAGDAESEADAQQ 149
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 93.1 bits (221), Expect = 3e-20
Identities = 41/77 (53%), Positives = 59/77 (76%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
YF ++ DN+L LE+IH +VE+LD +FG+VCELD+IFNF K ILDE++LGGE+ E
Sbjct: 67 YFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGE 126
Query: 475 TSKKNVLKAIAAQDLLQ 425
++KK+VL+ I A + L+
Sbjct: 127 SNKKSVLERIEALEKLE 143
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 62.1 bits (144), Expect = 7e-11
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
YF +++ ++EL L+LI +VE LD+ F +VCELD++F F++ + IL E+V GG + E
Sbjct: 70 YFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLE 129
Query: 475 TSKKNVLKAIAAQ 437
T+ ++ A Q
Sbjct: 130 TNLNEIVLAAQNQ 142
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 31.9 bits (69), Expect = 0.084
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
Y + N ++ LE + ++ L YFG + E + N + +LDE++ G +Q
Sbjct: 63 YVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGIIQT 122
Query: 475 TSKKNVLKAIA 443
T + ++++
Sbjct: 123 TEPDALARSVS 133
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +1
Query: 1 PSAVLAPLLVSRPQLSHASSFLQAXRSIV----SAXXFXXFKKQHTYKYKLSLXPLSYHE 168
P +V P S+P +SSF+ SIV A F QH+ +KL L L H+
Sbjct: 300 PRSVSQPTYFSQPMPQFSSSFVPGTSSIVPTLHPASAQEDFNLQHSLFFKLKLKFLPPHK 359
Query: 169 L 171
L
Sbjct: 360 L 360
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = -3
Query: 562 SVCELDIIFNFEKAYFILDELVLGGEL 482
++ ++++ +N E +FI +E+V GG+L
Sbjct: 217 NIIKVNMEYNSETQFFIFEEMVTGGDL 243
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 119 CFLKXXKXXAETMDRXAWRKEDACES 42
CFLK + E D W +EDA E+
Sbjct: 119 CFLKSCQYMVELSDEPLWIREDAREA 144
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 577 DKYFGSVCELDIIFNFEKAYFILDELV-LGGELQETSKKNVLKAIAAQDLLQEEETPQGF 401
D Y G +C + + FE +++ L+ +L+ TSK N + + ++
Sbjct: 29 DAYMG-LCN-SLTYRFEGWRHLVENLIAFFKQLESTSKNNAKEYMKLSKVIVHPYKDANV 86
Query: 400 FEDHGL 383
FE+HG+
Sbjct: 87 FEEHGI 92
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 546 TSSLTLRKLTSYLMNWFLVESYKKPVRRM 460
T LT+++ S L+NW LV Y K R+
Sbjct: 562 TELLTIKQPKSSLLNWGLVNGYPKTEGRI 590
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 487 ELQETSKKNVLKAIAAQDLLQE 422
+L ETSKKN+LK I ++L E
Sbjct: 114 QLVETSKKNLLKDINHDEVLME 135
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
Y + + + L + + ++ YF + E I NF Y +LDE++ G Q
Sbjct: 66 YLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFPQT 125
Query: 475 TSKK 464
T K
Sbjct: 126 TETK 129
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -3
Query: 640 MEQEDNELLTL---ELIHRYVELLDKY 569
M +ED EL L E IH+Y+++ D +
Sbjct: 361 MSEEDEELWELDPVEFIHKYIDIYDDF 387
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Frame = +1
Query: 25 LVSRPQLSHASSFLQAXRSIVSAXXFXXFKKQHTYKYKLSLXPLSY-----HELFFFSFH 189
+V P SHA +L + F F + Y Y L ++Y H+ +FS +
Sbjct: 190 IVPTPYSSHAFHYLDGYSQSLPYHMFPFFFPLNKYVYLLLFGSVNYWTVLIHDGKYFSNN 249
Query: 190 GMLLKFKHISVRHRYGCLMYEQ 255
++ H + H Y Y Q
Sbjct: 250 AVVNGAAHHAAHHMYFNYNYGQ 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,416
Number of Sequences: 5004
Number of extensions: 43350
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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