Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N08
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 112 3e-25
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 89 2e-18
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 82 4e-16
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570... 69 4e-12
03_02_0244 + 6750973-6751041,6751216-6751258,6751349-6751410,675... 55 6e-08
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895 49 3e-06
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545... 49 4e-06
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 33 0.26
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 33 0.26
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 31 0.61
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 31 0.81
05_06_0063 + 25289117-25290643 28 7.5
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 112 bits (269), Expect = 3e-25
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
YF ++ EDNEL LE+IH +VE+LD+YFGSVCELD+IFNF KAY+ILDE+++ GELQE
Sbjct: 177 YFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAGELQE 236
Query: 475 TSKKNVLKAIAAQ 437
+SKKNV + IAAQ
Sbjct: 237 SSKKNVARLIAAQ 249
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/77 (49%), Positives = 55/77 (71%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K Y ILDE +L GELQE
Sbjct: 75 FFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQE 134
Query: 475 TSKKNVLKAIAAQDLLQ 425
TSK+ +++ + + L+
Sbjct: 135 TSKRAIIERMGELEKLE 151
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/70 (48%), Positives = 53/70 (75%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
+F ++ ++NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E+V+ G + E
Sbjct: 67 FFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVE 126
Query: 475 TSKKNVLKAI 446
TSK+N+L I
Sbjct: 127 TSKQNILAPI 136
>03_06_0413 +
33756151-33756475,33756837-33756945,33757004-33757058,
33757059-33757094,33757196-33757282,33757737-33757808
Length = 227
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = -3
Query: 559 VCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQE 422
VCELD+IFNF KAYFILDE+++ GELQE++KK VL+ I QD L E
Sbjct: 164 VCELDLIFNFHKAYFILDEVLIAGELQESNKKAVLRLITTQDNLVE 209
>03_02_0244 +
6750973-6751041,6751216-6751258,6751349-6751410,
6751779-6751875,6752380-6752450,6752503-6752586,
6753040-6753294
Length = 226
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKA 521
YF + +NEL L+L+ +VE LD+ F +VCELDI+FNF KA
Sbjct: 71 YFVFVFDSSENELAVLDLVQVFVETLDRCFKNVCELDIVFNFNKA 115
>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
Length = 227
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/41 (53%), Positives = 32/41 (78%)
Frame = -3
Query: 568 FGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAI 446
FG CELDI+F+ EK +F+L+E+V+ G + ETSK+N+L I
Sbjct: 181 FGQ-CELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPI 220
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILD 506
+F ++ ++NEL LE IH +VE +D++FG+V + F+ YF D
Sbjct: 118 FFLVGVDNDENELAILEFIHLFVETMDRHFGNV----VFFSNPNNYFSCD 163
>01_03_0243 +
14154122-14154190,14154373-14154415,14154491-14154552,
14155214-14155310,14157663-14157733,14158338-14158694
Length = 232
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKA 521
Y + +NEL L+L+ +VE LD+ F +VCEL I+FNF KA
Sbjct: 71 YLGFVFDGSENELAVLDLVQVFVETLDRCFKNVCELHIVFNFNKA 115
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 625 NELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAI 446
N + + + R ++L Y G + E I NF Y ILDE++ G T++ N+LK +
Sbjct: 93 NMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNG-FPLTTEPNILKEM 151
Query: 445 AA 440
A
Sbjct: 152 IA 153
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
+ A Q N L +HR V++ YF + E + NF Y +LDE++ G Q
Sbjct: 70 FLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQY 129
Query: 475 TSKK 464
T K
Sbjct: 130 TEAK 133
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = -3
Query: 616 LTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKA 449
L LEL+ R + Y G + E + NF Y +LDE++ G Q TS + VLK+
Sbjct: 80 LLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVIDFGYPQTTSTE-VLKS 134
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
+ A Q N L +HR V++ YF + E + NF Y +LDE++ G Q
Sbjct: 71 FLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQY 130
Query: 475 T 473
T
Sbjct: 131 T 131
>05_06_0063 + 25289117-25290643
Length = 508
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 547 DIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGL 383
+++ K YF++ ELV GGEL K LK A+ Q+ + GF G+
Sbjct: 102 EVMATKSKIYFVM-ELVRGGELFGRVAKGRLKEDTARRYFQQLVSAVGFCHARGV 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,499
Number of Sequences: 37544
Number of extensions: 280154
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -