Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N08
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 177 4e-45
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 83 2e-16
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 74 8e-14
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 41 9e-04
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 39 0.004
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 38 0.005
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 35 0.044
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 35 0.044
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 33 0.13
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z70035-13|CAA93874.1| 432|Caenorhabditis elegans Hypothetical p... 29 2.9
Z47745-6|CAA87667.1| 432|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 28 5.1
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 6.7
AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical ... 28 6.7
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical ... 28 6.7
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 6.7
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa... 27 8.9
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as... 27 8.9
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 177 bits (432), Expect = 4e-45
Identities = 81/92 (88%), Positives = 87/92 (94%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
YF CA+EQ DNEL+TLE+IHRYVELLDKYFGSVCELDIIFNFEKAYFILDE +L GE+QE
Sbjct: 66 YFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGEIQE 125
Query: 475 TSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG 380
TSKK VLKAIAAQDL+QEEETPQGFFEDHGLG
Sbjct: 126 TSKKQVLKAIAAQDLIQEEETPQGFFEDHGLG 157
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 82.6 bits (195), Expect = 2e-16
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
YF ++ DN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE+ L GE++E
Sbjct: 66 YFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRE 125
Query: 475 TSKKNVLKAI 446
TS+ VLK +
Sbjct: 126 TSQTKVLKQL 135
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 74.1 bits (174), Expect = 8e-14
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
YF ++ ++EL L+LI +VE LD+ F +VCELD+IF+ ++ + IL E+V+GG + E
Sbjct: 72 YFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHILGEIVMGGMVLE 131
Query: 475 TSKKNVLKAIAAQDLLQEEE 416
T+ +L+ I QD +Q++E
Sbjct: 132 TNMNEILQRIQEQDKIQKQE 151
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 646 CAMEQED-NELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETS 470
CA+ +++ N + E + R+ + + YFG + E ++ NF Y +LDE++ G Q T
Sbjct: 66 CAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTD 125
Query: 469 KKNVLKAIAAQDLLQEEETP 410
VLK Q ++ + P
Sbjct: 126 -PGVLKTFITQQGVRTADAP 144
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 646 CAMEQED-NELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETS 470
CA+ +++ N + E + R+ + + YFG + E ++ NF Y +LDE++ G Q T
Sbjct: 66 CAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTD 125
Query: 469 KKNVLKAIAAQ 437
VLK Q
Sbjct: 126 -PGVLKTFITQ 135
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -3
Query: 646 CAMEQED-NELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETS 470
CA+ +++ N + + R+ + + YFG + E ++ NF Y +LDE++ G Q T
Sbjct: 66 CAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTD 125
Query: 469 KKNVLKAIAAQDLLQEEETP 410
VLK Q ++ + P
Sbjct: 126 -PGVLKTFITQQGVRTADAP 144
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
Y A N + L +++ VE+ +YF V E + NF Y +LDE++ G +
Sbjct: 66 YLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFG-FPQ 124
Query: 475 TSKKNVLKAIAAQD 434
T++ +L+ Q+
Sbjct: 125 TTESRILQEYITQE 138
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
Y A N + L +++ VE+ +YF V E + NF Y +LDE++ G +
Sbjct: 66 YLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFG-FPQ 124
Query: 475 TSKKNVLKAIAAQD 434
T++ +L+ Q+
Sbjct: 125 TTESRILQEYITQE 138
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -3
Query: 655 YFXCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQE 476
Y ++ N +L L +++ VE+ +YF ++ E + NF Y + DE++ G Q
Sbjct: 66 YLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQT 125
Query: 475 TSKKNVLKAIAAQ 437
T K + + I Q
Sbjct: 126 TESKILQEFITQQ 138
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
F31C3.3 protein.
Length = 2029
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -3
Query: 499 VLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAPSVLRSG 347
+L G+L +S+K V +A+ D E ET + +ED GL A ++SG
Sbjct: 971 LLHGKLLWSSEKLVTTMLASTDPYNETETVEMLWEDFGLDWALGEIRIKSG 1021
>Z70035-13|CAA93874.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.11 protein.
Length = 432
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 586 ELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEET 413
E D YF + +L F +K Y+IL ++ L KK + K I + D + T
Sbjct: 190 EYRDAYFAFINQLRKTFEAKKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYST 247
>Z47745-6|CAA87667.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.11 protein.
Length = 432
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 586 ELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEET 413
E D YF + +L F +K Y+IL ++ L KK + K I + D + T
Sbjct: 190 EYRDAYFAFINQLRKTFEAKKKYYILSIVIPPPTLDGWGKKRLNKIIESVDFINAYST 247
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -3
Query: 631 EDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGG 488
E L+ +E +HR ++ +YF + + N + +LDE++ G
Sbjct: 73 ETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNG 120
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -3
Query: 511 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 365
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical
protein K01A11.5 protein.
Length = 626
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 562 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 410
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 106 SMANTEKFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 153
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -3
Query: 511 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 365
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>AL021481-7|CAA16331.3| 629|Caenorhabditis elegans Hypothetical
protein Y43F4B.2 protein.
Length = 629
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 562 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 410
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 106 SMANTERFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 153
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 562 SVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETP 410
S+ + F+F+ A F + + +LQETS+ N+L + Q ++EETP
Sbjct: 629 SMANTERFFDFDPAVFPEE---MDHDLQETSEFNLLCHNSYQSPFEDEETP 676
>AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical
protein C53D5.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 431 KILGSDGFQDIL-LTGFL*LSTKNQFIKYEVSFLKVKDDVQFTNTAKILVQQF 586
+ +G++ FQ+ + TGF+ T+ + + +K+ D++ N LV+QF
Sbjct: 3 EFIGNEEFQNFMKATGFIQEFTRRLLERSSKNIIKIPDNLSNVNQLTCLVKQF 55
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -3
Query: 511 LDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG*AAAP 365
+DE E +E SK+ + I ++D++ +E P+GF+E G+ AP
Sbjct: 1989 IDESDDDEENEEVSKEENNELIDSEDVM--DEVPKGFYEREGILRVGAP 2035
>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
protein kinase protein.
Length = 1425
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 616 LTLELIHRYVELLDKYFGS--VCELDIIFNFEKAYFILDELVLGGEL-QETSKKNVLKAI 446
+T + I R V +L K G+ V EL ++ I+ ELV GGEL K L +
Sbjct: 71 VTRQNIEREVRVLQKIRGNSNVVELHAVYETASDVIIVLELVSGGELFDHVCAKECLDEV 130
Query: 445 AAQDLLQE 422
A +++
Sbjct: 131 EAAAFIKQ 138
>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
(death-associated protein)kinase homolog protein 1
protein.
Length = 1425
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 616 LTLELIHRYVELLDKYFGS--VCELDIIFNFEKAYFILDELVLGGEL-QETSKKNVLKAI 446
+T + I R V +L K G+ V EL ++ I+ ELV GGEL K L +
Sbjct: 71 VTRQNIEREVRVLQKIRGNSNVVELHAVYETASDVIIVLELVSGGELFDHVCAKECLDEV 130
Query: 445 AAQDLLQE 422
A +++
Sbjct: 131 EAAAFIKQ 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,246,479
Number of Sequences: 27780
Number of extensions: 247406
Number of successful extensions: 692
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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