Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N06
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    26   5.0  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   8.8  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 277 NDNFLVSLRDIVDYQNDI 330
           N  +L+S++D VD+QND+
Sbjct: 477 NQPYLLSIQDPVDFQNDV 494


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 526 IFCKYNAIKRLILDYTYSIILITVKSQMINKTAFYCPFHFFINF 395
           IFC+  AI  LI+      I+ + K   IN   FY   H++  F
Sbjct: 91  IFCEVVAIYSLII-----AIVFSAKINDINPAGFYTKSHYYTGF 129


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 406 KSGRGNKMQFCLSFGI 453
           + G G KM +CL FGI
Sbjct: 220 EQGWGKKMSYCLGFGI 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,487
Number of Sequences: 5004
Number of extensions: 43010
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)