Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N05
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    40   3e-04
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    32   0.061
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    28   0.76 
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.0  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   7.0  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.0  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.3  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -2

Query: 457 NYIIPKGTFILLSLY-ELHHGPHWKDPETFRPERFLTKEGNILQD--EWLIPFGIGKRRC 287
           +Y +PK   ++ +LY  LH    + +PETF P+R+    G   Q    W++ FG G   C
Sbjct: 402 DYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRW-APNGLAEQSPKNWMV-FGNGPHVC 459

Query: 286 IGEGLARSEL 257
           +G+  A + L
Sbjct: 460 LGQRYAVNHL 469


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.9 bits (69), Expect = 0.061
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 316 IPFGIGKRRCIGEGLARSELFMFLTHILQKF 224
           +PFG G+ RCIGE  A    +M L+ I+ KF
Sbjct: 433 LPFGAGRHRCIGEQFA----YMHLSTIISKF 459


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 201 SFLGILRWNF*RI*VRNMKSSERANPSPIQRRFPIPKGMSHSSCKMLPSLVRNRSGRNVS 380
           S   ILRW+F ++  +N  SS  +N SP   ++ I K +   +C     LV N + R  S
Sbjct: 124 SIFSILRWSFQKLGFQNQASSILSNRSP-SGQYVIRKNIEKLAC-----LVHNEAMRRCS 177


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 249 NMKSSERANPSPIQRRFPIPKGMSHSSCKMLPSLVRN 359
           N  + E+ N  P+Q   P+P  MS +S  +  S + N
Sbjct: 41  NRLAVEKPNIQPLQGHSPVPSFMSTASTNISSSKINN 77


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 174 MDFHCPLSNSGLFSNREKH 118
           M FH P+SNSG  + R  H
Sbjct: 200 MQFHLPISNSGAATPRSVH 218


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 517 ISTVASMGIPHMALNDAKLGNYIIPKGTFILLSLYELHH 401
           I T+ASM +P +         ++   G F LL L+  ++
Sbjct: 252 IGTLASMQVPFVGFQPVSTSEHMSALGVFGLLQLFAFYN 290


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 214 IPKNEPLPSTEPIDGLSLSAKQFRIIFEP 128
           +P N  +P TEP+D  SLS  Q R    P
Sbjct: 190 LPSNS-IPKTEPLDTPSLSNSQERFSKSP 217


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 339 LPSLVRNRSGRNVSGSFQCGP*CSSYSDNKIKVPFG 446
           L S    R   N S S    P  S +SD ++ VP+G
Sbjct: 207 LVSAGNGRETVNASASGAVNPTSSQWSDQRLGVPYG 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,107
Number of Sequences: 5004
Number of extensions: 49263
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)