Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N03
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   117   2e-27
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    33   0.044
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.7  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   6.7  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   8.9  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  117 bits (281), Expect = 2e-27
 Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
 Frame = -2

Query: 758 ELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXX 582
           E+VPV VP  RG P  +  EDEE K +N +K   +  VF K NGTVTA NASTLNDG   
Sbjct: 200 EIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLNDGASA 258

Query: 581 XXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEI 402
                    K L +KP+A+I+G+ +   DP  F  +P++AIPK L+  G+    V  +EI
Sbjct: 259 LVLMSAAKVKELGLKPLAKIIGWGEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEI 318

Query: 401 NEAFSVVAVA 372
           NEAFSVVAVA
Sbjct: 319 NEAFSVVAVA 328



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 31/60 (51%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
 Frame = -3

Query: 349 DPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEKM 176
           DP ++N++GG V++GHP+G SG+RI+  L + L  K  + GVA++CNGGGGASS++IE++
Sbjct: 336 DPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
 Frame = +1

Query: 373 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 552
           +T++T  +S  S  ATS+  TP+ S N   AT+ +       +S SA         + N 
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANS 396

Query: 553 LAASAVINTKAAAPSFNVEA-LPAVTV---PFSFWN-TVDNFVNFSKLTLLYSSSSANIT 717
             +++V +T   APS+N  + LP  +V   P S  N T     + + L+ + S+++ + +
Sbjct: 397 TTSTSVSST---APSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSAS 453

Query: 718 GAPL-FCGTGTGTSSS 762
             PL    + T TS+S
Sbjct: 454 STPLSSVNSTTATSAS 469



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
 Frame = +1

Query: 373 ATATTLKASFISHNATSSFL--TPVFSNNLGMA--TAGAIGKSMGSHSPSANPTIRAIGL 540
           A+++T  +S  S + TSS L  + + S++L  +  T+ ++  S  + + SA PT  A   
Sbjct: 120 ASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSS 179

Query: 541 TFNLLAASAVINTKAAAPSFNVEALPAVTVPFSFWNTVDNFVNFSKLTLLYSSSSANITG 720
           + +  AAS    + + A S       A     S  +T  +  N +  + L SSS  + T 
Sbjct: 180 SLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAAS--NSATSSSLASSSLNSTTS 237

Query: 721 APLFCGTGTGTSSS 762
           A     + + T SS
Sbjct: 238 ATATSSSISSTVSS 251



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
 Frame = +1

Query: 376 TATTLKASFISHNATSSFLTP---VFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTF 546
           T++   +S  S +A SS LT    + S++    T+ +   S  + S + + ++ +   T 
Sbjct: 67  TSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTS 126

Query: 547 NLLAASAVINTKAAAPSFNVEALPAV-TVPFSFWNTVDNFVNFSKLTLLYSSSSANITGA 723
           + LA+S++ ++  A+ S    +L +  T   S  ++  N    +  T   +SSS + T A
Sbjct: 127 SSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAA 186

Query: 724 PLFCGTGTGTSSS 762
                + +  SSS
Sbjct: 187 SNSATSSSLASSS 199



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
 Frame = +1

Query: 373 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 552
           AT+++L ++  S++ATSS L     N+   ATA +   S  + S SA  +        +L
Sbjct: 176 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSS--------SL 227

Query: 553 LAASAVINTKAAAPSFNVEALPAVTVPFSFWN--TVDNFVNFSKLTLLYSSSSANITGAP 726
            ++S    T A A S ++ +  + + P +  N  T     + +  +  Y++SS   +  P
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
 Frame = +1

Query: 373 ATATTLKASFISHNATSSFLTPVFSNNLGMATA---------GAIGKSMGSHSP--SANP 519
           A++T L +S  S  ATS+  TP+ S N   AT+          +   +  S +P  S N 
Sbjct: 436 ASSTPL-SSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494

Query: 520 TIRAIGLTFNLLAASAVINT--KAAAPSFNVEA-LPAVTV---PFSFWN-TVDNFVNFSK 678
           T      +  L +A++  +T   + APS+N  + LP  +V   P S  N T     + + 
Sbjct: 495 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 554

Query: 679 LTLLYSSSSANITGAPLFCGTGTGTSSS 762
           LT + S+++ + +  P   G  T TSS+
Sbjct: 555 LTSVNSTTATSASSTPF--GNSTITSSA 580


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 716 VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDG 591
           +IF+ED+E   ++F++F   S +    N  +    AS L  G
Sbjct: 445 LIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTG 486


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 24/130 (18%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
 Frame = +1

Query: 376 TATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLL 555
           + +++ ++  S ++TSS L+   S++   +++ +      S S S++PT  +  ++ +  
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295

Query: 556 AASAVINTKAAAPSFNVEALP-AVTVPFSFWNTVDNFVNFSKLTLLYSSSSANITGAPLF 732
           ++S+  +T +   S +  +   + T+  S  ++  +F +    +    SSS++   +  F
Sbjct: 296 SSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSF 355

Query: 733 CGTGTGTSSS 762
             T + + SS
Sbjct: 356 SSTTSSSKSS 365



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 27/130 (20%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
 Frame = +1

Query: 376 TATTLKASFISHNATSSF-LTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 552
           ++T+++ S  S + +SS  LT    ++L  +T+ +   S+ S S S   +      + + 
Sbjct: 151 SSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSS-QPSVSSTSSSTFSSAAPTSTSSSY 209

Query: 553 LAASAVINTKAAAPSFNVEALPAVTVPFSFWNTVDNFVNFSKLTLLYSSSSANITGAPLF 732
           L++S+V+++ ++  S +   L + ++  S   +  +  + +  +L  SSSS+  + +   
Sbjct: 210 LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSS 269

Query: 733 CGTGTGTSSS 762
               + +SSS
Sbjct: 270 SSIISSSSSS 279


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +1

Query: 373 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTI 525
           +TAT   +S  S +++SS  TP+ S+++  + + +   S+ S S S++ +I
Sbjct: 145 STATPSSSSTTSSSSSSSSSTPI-SSSITSSISSSASSSVSSSSASSSGSI 194


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 301 PIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSVMIE 182
           P G+SG  I+V LC A    E    +I   G G +S+ IE
Sbjct: 229 PKGLSGKDIIVSLCGAFNHDEVLNHAIEFYGEGLNSLSIE 268


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 660 FCKLFKINSFILFIFSKYYRSPSFLW 737
           F KLF+I+ +IL +FS Y    +  W
Sbjct: 73  FSKLFRISLYILGVFSLYMFRWAIAW 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,113
Number of Sequences: 5004
Number of extensions: 59457
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)