Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N03
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 99 4e-21
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 73 3e-13
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 66 4e-11
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 62 6e-10
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819 31 0.76
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 30 1.7
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 4.0
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 5.3
07_03_1412 - 26392239-26392826 28 7.1
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60... 28 7.1
04_03_0192 + 12474614-12474665,12475100-12475152,12475793-12476032 28 9.3
02_03_0122 - 15491106-15491509,15492668-15492695 28 9.3
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 98.7 bits (235), Expect = 4e-21
Identities = 57/130 (43%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = -2
Query: 758 ELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXX 582
E+VP+ VP RG P V+ +DE + + K KL F++ GTVTAGNAS+++DG
Sbjct: 205 EIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPSFKENGGTVTAGNASSISDGAAA 264
Query: 581 XXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEI 402
A+ L ++ IARI GFAD P F +PA+AIPK L G+ V +EI
Sbjct: 265 LVLVSGQKAQELGLQVIARIKGFADAAQAPELFTTSPALAIPKALANAGLESSRVDYYEI 324
Query: 401 NEAFSVVAVA 372
NEAFS VA+A
Sbjct: 325 NEAFSAVALA 334
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/55 (67%), Positives = 45/55 (81%), Gaps = 2/55 (3%)
Frame = -3
Query: 340 KINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 182
KINVHGGAVSLGHP+G SGARI+V L L K G+ GVA +CNGGGGAS++++E
Sbjct: 345 KINVHGGAVSLGHPLGCSGARILVTLLGVLREKGGKIGVAGVCNGGGGASALVLE 399
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
Frame = -3
Query: 340 KINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 182
K+N+ GG VSLGHPIG SGARI+V L L K G+ GVA +CNGGGGAS++++E
Sbjct: 336 KLNLSGGGVSLGHPIGCSGARIIVTLLGILRHKNGKIGVAGVCNGGGGASALVVE 390
Score = 58.0 bits (134), Expect = 8e-09
Identities = 42/129 (32%), Positives = 61/129 (47%)
Frame = -2
Query: 758 ELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXX 579
E+ PV + RG P + + +E + K T L + + +DG
Sbjct: 211 EIAPVEISSGRGKPPLIVDKDE----SLAKCTSLPSRLPSK----------IRSDGAAAI 256
Query: 578 XXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEIN 399
AK L ++ IARI G+AD P F PA+AIPK + G++ + +EIN
Sbjct: 257 VLVSGQKAKSLGLQVIARIRGYADAAQAPELFTTTPALAIPKAVSNAGLQTSQIDYYEIN 316
Query: 398 EAFSVVAVA 372
EAFSVVA+A
Sbjct: 317 EAFSVVALA 325
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 65.7 bits (153), Expect = 4e-11
Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = -2
Query: 761 DELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTL 600
DE+VPVP V K G VI +D KL VF+K+ GT TAGN+S +
Sbjct: 233 DEIVPVPTKIVDPKTGEEKKVVISVDDGIRPGTTASGLAKLKPVFRKD-GTTTAGNSSQV 291
Query: 599 NDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKED 420
+DG A + + + FA DP + PAVAIP ++ G++ ED
Sbjct: 292 SDGAGAVLLMRRDVAMKKGLPILGVFRSFAAVGVDPAVMGVGPAVAIPAAVKSAGLQIED 351
Query: 419 VALWEINEAFS 387
+ L+E+NEAF+
Sbjct: 352 IDLFELNEAFA 362
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Frame = -3
Query: 349 DPSKINVHGGAVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIE 182
D SK+NV+GGA++LGHP+G +GAR V L + +K+ + GV ++C G G ++ + E
Sbjct: 375 DRSKVNVNGGAIALGHPLGATGARCVATLLNEMKRRGRDCRFGVVTMCIGSGMGAAAVFE 434
Query: 181 K 179
+
Sbjct: 435 R 435
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 61.7 bits (143), Expect = 6e-10
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = -2
Query: 761 DELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTL 600
+E+VPV V K G V+ A+D + +KL F K+ GT TAGNAS +
Sbjct: 235 EEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGTSLAVLSKLKPAFSKD-GTTTAGNASQV 293
Query: 599 NDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKED 420
+DG A + + + FA DP + PAVAIP ++ G++ +D
Sbjct: 294 SDGAGAVLLMRRDIAMQKGLPIVGVFRSFAAVGVDPAIMGVGPAVAIPAAVKAAGLQIDD 353
Query: 419 VALWEINEAFS 387
V L+EINEAF+
Sbjct: 354 VDLFEINEAFA 364
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Frame = -3
Query: 349 DPSKINVHGGAVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIE 182
DP+K+NV+GGA++LGHP+G +GAR V L + +K+ K GV S+C G G ++ + E
Sbjct: 377 DPAKVNVNGGAMALGHPLGATGARSVSTLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFE 436
Query: 181 K 179
+
Sbjct: 437 R 437
>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
Length = 598
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +1
Query: 496 SHSPSANPTIRAIGL----TFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 657
S +P T++ IG+ + L+ SA++ T+ A F + P T+P SFW V
Sbjct: 429 SKNPRGITTLQRIGIGLIISVILMVVSALVETRRLMVARDFGLVDNPEATIPMSFWWVVP 488
Query: 658 NFV 666
F+
Sbjct: 489 QFI 491
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 385 TLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLLAAS 564
T + + N+T L V NLG ++AG +G S + ++ + G NL +
Sbjct: 1172 TQSGAELDANSTVEVLGEVLGTNLGASSAGNLGVS----AIRSDERVGLAGDARNLRLGT 1227
Query: 565 AVINTKAAAPSFNVEALPA 621
++ N + + S VE LPA
Sbjct: 1228 SMPNLSSDSASAQVEVLPA 1246
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 225 EATPFSPFFKAWHRCTTMRAPDIPIG*PKLTAP 323
+ PF+ F W RC M P P+ PK AP
Sbjct: 168 DGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAP 200
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 418 TSSFLTPVFSNNLGMATAGAIGKSM------GSHSPSANPTIRAIGLTFNLLAASAVIN- 576
TS T S + +ATAG +S GSH+P++ +++A NLL++ N
Sbjct: 202 TSQTPTRGVSPQVNLATAGIPTQSSTPIAGYGSHTPASTTSVKANSADLNLLSSPPAAND 261
Query: 577 TKAAAPSFN 603
+KA P N
Sbjct: 262 SKALVPLGN 270
>07_03_1412 - 26392239-26392826
Length = 195
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 482 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFS 387
P+ A+P LE+T VR + V L+ EAF+
Sbjct: 88 PMTEGRALPPSLEETAVRAQGVYLYNSKEAFN 119
>05_01_0090 +
598311-599597,599884-599997,600186-600450,600994-601109
Length = 593
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -3
Query: 325 GGAVSLGHPIGMSGARIVVHLCHA--LKKGEKGVASICNGGGGASSVM 188
GG S+GH + G H L +AS GGGG +SV+
Sbjct: 43 GGCNSIGHILSFDGRDAPAFAIHGVLLPSNPSTMASTGGGGGGGASVL 90
>04_03_0192 + 12474614-12474665,12475100-12475152,12475793-12476032
Length = 114
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 322 GAVSLGHPIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSV 191
G + IG G+ + V A + G+KG A +C GG ++ V
Sbjct: 54 GGKNAATQIGGEGSDVRVLQAAAAQMGKKGAAHVCITGGSSTDV 97
>02_03_0122 - 15491106-15491509,15492668-15492695
Length = 143
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 283 ARIVVHLCHALKKGEKGVASICNGG 209
AR+ VHL H +K +GVA C GG
Sbjct: 2 ARLAVHLVHLRRKPARGVA--CGGG 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,593
Number of Sequences: 37544
Number of extensions: 406526
Number of successful extensions: 1308
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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