Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N02
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   2.3  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   3.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.0  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   7.1  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 106 IFDKEMXSIKDGVMSRSSEEVGREDLXQLYHVEC 5
           +F+K M +   G   +  EE+G ED   LY V C
Sbjct: 263 VFEKGMDAA--GFERQMGEEIGEEDFGSLYPVTC 294


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 237 HIVAHGHQQNRDKVKPCLPLWTLLRPRLKKGC 332
           H + H  + NR+++KP  P+  L  P+  KGC
Sbjct: 303 HDIQHRARVNREEIKPRWPMIILRTPK-GKGC 333


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 284  WLDFIPVLLMSVSDDVFSTS*IICLFIIKTKSLIVYLTIHSTKYPIA 144
            WL FIP LL S+S      + ++   I K+    ++ T+ + +  IA
Sbjct: 3063 WLTFIPQLLNSLSKGDTKCAPVVLKKIAKSYPQALFFTLRTAREDIA 3109


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 190 DFVFMINKHMIHDVENTSSLTDISKTGIKSSHVYRYGLFSDLV 318
           D  F   +  + D+E+T     I+++G+  S V+RYGLF + V
Sbjct: 460 DQCFTSKRRSLVDIEST-----INQSGLSGS-VFRYGLFENYV 496


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 216 MFVYHKNKIVNC 181
           MFVYH+  IVNC
Sbjct: 79  MFVYHQQLIVNC 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,202
Number of Sequences: 5004
Number of extensions: 47971
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)