Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N02
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530...    30   1.8  
01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538           29   3.2  

>01_01_0690 -
           5306754-5307047,5307107-5307279,5308223-5308370,
           5309110-5309356,5309694-5309839,5312482-5312707,
           5313652-5313874,5314054-5314202,5315345-5315514,
           5316064-5316135,5317610-5317741,5317813-5317900,
           5319440-5319656,5320123-5320306,5320644-5320727,
           5321148-5321242,5321519-5321562,5321707-5322367,
           5323053-5323356
          Length = 1218

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 297 WTLLRPRLKKGCHRAQEKPWFIPK--PNGTQQKG 392
           W  L P+L +  H    KPW +P   PNGT+QKG
Sbjct: 877 WVSLNPKLLE--HFKPSKPW-VPAITPNGTKQKG 907


>01_01_0236 - 1967323-1967360,1967420-1968185,1969332-1969538
          Length = 336

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 324 KGC-HRAQEKPWFIPKPNGTQQKGCL 398
           +GC HR  ++ WF P+ N  ++KG L
Sbjct: 9   QGCRHRPSKEMWFSPRENSPREKGIL 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,986,152
Number of Sequences: 37544
Number of extensions: 269620
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)