Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N02
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 255 VRERRCVLNIMNHMFVYHKNKIVNCIFDN 169
           VRE     N+ N + V HK K ++  FDN
Sbjct: 23  VRENSSGKNLTNTLNVIHKWKYLDYDFDN 51


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 403 ASRHPFCCVPFGFG 362
           ASRHP   +PFG G
Sbjct: 427 ASRHPMHYLPFGDG 440


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -2

Query: 231 NIMNHMFVYHKNK 193
           ++M H++ YHK++
Sbjct: 50  SLMTHIYTYHKSR 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,067
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)