Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M18
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    26   3.1  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   7.2  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    25   7.2  

>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
 Frame = +3

Query: 414 NKHSHPPR---WLRQPGL 458
           N H HPPR   WLR P L
Sbjct: 476 NSHGHPPRGEIWLRGPSL 493


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 258 YTTNIINVNRTKHRLLIYFKNNINVID 178
           +  + + V ++K ++  +FKNNIN+ +
Sbjct: 391 FVKHYLTVPKSKEKISAFFKNNINLFE 417


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 521 KYARMPEPKKETVILPQKEKLKSWL 447
           K   +PEP  E V +P+K+ L+S L
Sbjct: 119 KSENVPEPAGEKVSMPEKQDLQSAL 143


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 506 PEPKKETVILPQKEKLKSWLSKPP 435
           PEP++E V  P  E+ K+  S PP
Sbjct: 85  PEPEQEVVASPVTEQKKAEPSAPP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,278
Number of Sequences: 5004
Number of extensions: 33267
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)