Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M17
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    85   2e-15
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    40   0.055
UniRef50_P34321 Cluster: Uncharacterized protein C07A9.10; n=1; ...    35   1.6  
UniRef50_UPI000023D68A Cluster: hypothetical protein FG04118.1; ...    33   6.3  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 84.6 bits (200), Expect = 2e-15
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = +2

Query: 128 GTRSVGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADKG 274
           G RSVGRPPTRWTDDLV+ AGS WM+ A+DR +WK+LG+A+VQQW   G
Sbjct: 449 GRRSVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 39.9 bits (89), Expect = 0.055
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 128 GTRSVGRPPTRWTDDLVRTAG-SRWMRKAEDRIMWKALGKAYVQQWADKG 274
           G R+ GR   RW D+L +  G + W ++A +R +W    +A++ QW D G
Sbjct: 388 GKRNRGRQRKRWRDELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437


>UniRef50_P34321 Cluster: Uncharacterized protein C07A9.10; n=1;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           C07A9.10 - Caenorhabditis elegans
          Length = 254

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = +2

Query: 134 RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 238
           R VG+PP RWTD L +   +R         W  +A+DR  WKA+
Sbjct: 15  RPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58


>UniRef50_UPI000023D68A Cluster: hypothetical protein FG04118.1; n=1;
            Gibberella zeae PH-1|Rep: hypothetical protein FG04118.1
            - Gibberella zeae PH-1
          Length = 1014

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 254  GHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPAGEKMRDI 102
            G   S +PS   GP    S D  P   +++  W ++  R+ +  GE +RD+
Sbjct: 911  GRSSSEVPSPELGPGDKTSKDSSPTRSAKEPGWDDEKLRAFFDDGEHVRDL 961


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,877,887
Number of Sequences: 1657284
Number of extensions: 10036933
Number of successful extensions: 28934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28659
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)