Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M17
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   5.7  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   10.0 
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   10.0 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 263  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPAGEKM 111
            P+AG  P P+P+    P P+ S++ P  +  R S     +  S  P    M
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSM 1272


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 149 PPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADK 271
           P   W DD+  T  + W RK  D I  +      V +W  K
Sbjct: 496 PRREWGDDIPTTKEAFWYRKLFDEIFPRQCADT-VMRWVPK 535


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 230 ST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPAG 120
           ST C  PP A+  +   AL   + W+     S YP G
Sbjct: 103 STQCEIPPGATFYYNYTALQNGTYWVHSHDMSQYPDG 139


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  VIISQRSSIIFNPXVXFVSXSXLHSFNVSHL 116
           +++S++ +   +P V   S   L  FN+SH+
Sbjct: 176 ILLSKKHNTFLSPVVSKASAGALEVFNISHV 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,213
Number of Sequences: 5004
Number of extensions: 40201
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)