Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M16
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000069E524 Cluster: UPI000069E524 related cluster; n...    33   5.0  
UniRef50_Q6LFK8 Cluster: DNA repair protein RAD50, putative; n=1...    33   8.7  

>UniRef50_UPI000069E524 Cluster: UPI000069E524 related cluster; n=7;
           Xenopus tropicalis|Rep: UPI000069E524 UniRef100 entry -
           Xenopus tropicalis
          Length = 311

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -3

Query: 351 CLLMVSHNKVSIASIKKFYSINFFSF---SVTSSMPLILLRHVTILINIFQFSSILTTNP 181
           C+L      +   ++  +YSI F+++   +  S +P+I+L  +T L ++F F   L   P
Sbjct: 178 CVLYALLMCLFTCAVSLYYSILFWTYRLPNTESKVPIIVLFVLTALFSLFLFLFFLAHFP 237

Query: 180 LYTW 169
           L TW
Sbjct: 238 LATW 241


>UniRef50_Q6LFK8 Cluster: DNA repair protein RAD50, putative; n=1;
            Plasmodium falciparum 3D7|Rep: DNA repair protein RAD50,
            putative - Plasmodium falciparum (isolate 3D7)
          Length = 2236

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 552  K*FRFLKSKQIMDTFRNK*F-SNIDSKLSDFRENDPYCTYIVQRH*GEDITKNIFHYKQF 376
            K F    +K I++ F NK   SN++   S    ND     + Q++  ++  KN F Y  +
Sbjct: 1286 KKFAKYNNKDIINIFYNKICTSNVNDSYSYIPYNDIINVDLYQQYNYQNNYKNRFKYNLY 1345

Query: 375  FLNL*GMKCLLMVSHNKVSI 316
             +N     C L+  H KVS+
Sbjct: 1346 KINNANYICKLLSPHQKVSL 1365


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,992,044
Number of Sequences: 1657284
Number of extensions: 9340515
Number of successful extensions: 17803
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17800
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)