Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M16
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    28   1.1  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    28   1.5  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   2.6  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   4.5  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   7.8  

>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 282 FSFSVTSSMPLI----LLRHVTILINIFQFSSILTT 187
           F   V SS+PLI     LR++ I ++ F F SIL T
Sbjct: 111 FLMGVVSSLPLIGRLEFLRNIRISLSFFSFFSILVT 146


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 273 SVTSSMPLILLRHVTILINIFQFSSILTTN 184
           S+ S +P+IL+R  +ILIN+    +++  N
Sbjct: 120 SINSIVPVILVREGSILINLLHIRALIKAN 149


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 358 PLKIKEELFVMKNILSDILTSMSLHNICTIWIIFSKIGQFTINI 489
           P + K++   +K I  DI+ S  ++ +C +WI   +     +N+
Sbjct: 239 PARPKKKPLTLKAI-KDIVRSWRIYGLCILWIFSGETQAIAVNV 281


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 543 RFLKSKQIMDTFRNK*FSNIDSKLSDFRENDPY 445
           R+LK+++ + T+ ++ F   +S   +   NDPY
Sbjct: 270 RYLKTQRALLTYDSRDFDEAESLFENILTNDPY 302


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 170 GGIWI*LHNRLGNYXNVLQXCKCXKNEARE 81
           G +WI + ++  N  +VLQ   C +N+A E
Sbjct: 115 GSLWIEVEDKNDNGASVLQPEGCWRNKATE 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,376
Number of Sequences: 5004
Number of extensions: 45313
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)