Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M14
         (535 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000069ED82 Cluster: UPI000069ED82 related cluster; n...    39   0.083
UniRef50_P24896 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    37   0.33 
UniRef50_Q21094 Cluster: Putative uncharacterized protein twk-14...    35   1.0  
UniRef50_Q4D432 Cluster: Putative uncharacterized protein; n=2; ...    33   3.1  
UniRef50_Q6LF86 Cluster: Putative leucyl-trna synthetase, cytopl...    33   4.1  

>UniRef50_UPI000069ED82 Cluster: UPI000069ED82 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI000069ED82 UniRef100 entry -
           Xenopus tropicalis
          Length = 250

 Score = 38.7 bits (86), Expect = 0.083
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 204 FIDLFSVYIMYTIIWIGLNRFFLFLCRCT*YCPLKPYHFHYLIVMYPRYIFVSCYFPLY 28
           +I L+ +   Y  ++  ++R+       + Y PL P  FHY I +YP Y  +S Y PLY
Sbjct: 97  YISLYPIISCYIPLYPTISRYIPLYPSISHYIPLYPTIFHY-IPLYPVYPTISHYIPLY 154


>UniRef50_P24896 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=20; Chromadorea|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Caenorhabditis elegans
          Length = 527

 Score = 36.7 bits (81), Expect = 0.33
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 353 FCTC-LIITIDVRXTNCINYRQLSNEMS*FFSYYFFGCIFICTLYSFRVWHL*IFLVFTL 177
           FC C LI +      + I     SN    FFS  FF  +F+   YSFR+W    FL F  
Sbjct: 331 FCLCGLIFSSGAVSKDFILELFFSNNYMMFFSLMFFVSVFLTFGYSFRLWKS-FFLSFNK 389

Query: 176 CIQLYGSA*IDFFCSCVDVL 117
            +  Y S     F S V V+
Sbjct: 390 VMNHYSSTVFMNFLSLVLVI 409


>UniRef50_Q21094 Cluster: Putative uncharacterized protein twk-14;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein twk-14 - Caenorhabditis elegans
          Length = 383

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -1

Query: 187 CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVP-FSLFDS--YVPSIYFCFMLFSII 29
           C  ++ N+   +  +FF+L  M L+L T +   +S+ ++  Y+ S+YFCF+ F+ I
Sbjct: 219 CGGHMDNWRPSVYKVFFILFSMCLVLITASAGIYSVVENWNYIDSLYFCFISFATI 274


>UniRef50_Q4D432 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1448

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -3

Query: 380 VXIXKDEISFCTCLIITIDVRXTNCINYRQLSNEMS*FFSYYFFGCIFICTLYSFRVWHL 201
           V   K+E S C C      V    C     LS+    ++ YYF+G +FI  L+ F VW +
Sbjct: 36  VWCAKEEPSCCFCCFCVF-VGGPRC-----LSSSFYFYYYYYFYGVLFIFFLFPFVVWSM 89


>UniRef50_Q6LF86 Cluster: Putative leucyl-trna synthetase,
           cytoplasmic; n=1; Plasmodium falciparum 3D7|Rep:
           Putative leucyl-trna synthetase, cytoplasmic -
           Plasmodium falciparum (isolate 3D7)
          Length = 1447

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +1

Query: 55  NISRVHNYQIMKMVRF*WTILSTSTQEQKKSI*ADPYNCIHNVNTKKIYKCQTLNEYRVQ 234
           NIS++ N  I+ M      I ST       S   D Y C+ ++  KK Y C+  N    Q
Sbjct: 544 NISKIKNLYILPMTTIKMNI-STGIVPCVSSDSTDDYACLEDIRKKKNYYCEKYNLKEEQ 602

Query: 235 IK 240
           +K
Sbjct: 603 LK 604


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,475,492
Number of Sequences: 1657284
Number of extensions: 7982374
Number of successful extensions: 15864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15847
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)