Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M14
         (535 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.10 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = -3

Query: 353 FCTCLIITIDVRXTNCINYRQLSNEMS*FFSYYFFGCIFICTLYSFRVWHL*IFLVFTLC 174
           +C  +I T+         Y      +  ++ YY F    +  L+   +++  + L F LC
Sbjct: 86  YCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLC 145

Query: 173 IQLYGSA*IDFFCSCVDVLNIVH 105
           I  +  A I F    + +L I H
Sbjct: 146 IYYFYCAFIIFTVHLLFLLCIYH 168


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 97   VPFSLFDSYVPSIYFCFMLFSII 29
            VP  ++   +PS+Y   +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 97   VPFSLFDSYVPSIYFCFMLFSII 29
            VP  ++   +PS+Y   +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 97   VPFSLFDSYVPSIYFCFMLFSII 29
            VP  ++   +PS+Y   +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 97   VPFSLFDSYVPSIYFCFMLFSII 29
            VP  ++   +PS+Y   +L+SII
Sbjct: 1030 VPGIIYLLSIPSMYLLLILYSII 1052


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 260 YYFFGCIFICTLYS 219
           YYFF  I  C L S
Sbjct: 213 YYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 260 YYFFGCIFICTLYS 219
           YYFF  I  C L S
Sbjct: 213 YYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 260 YYFFGCIFICTLYS 219
           YYFF  I  C L S
Sbjct: 213 YYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 260 YYFFGCIFICTLYS 219
           YYFF  I  C L S
Sbjct: 213 YYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 260 YYFFGCIFICTLYS 219
           YYFF  I  C L S
Sbjct: 213 YYFFNLIVPCVLIS 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,834
Number of Sequences: 336
Number of extensions: 2664
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)