Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M14
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.44 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.0  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   7.1  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 195 LFSVYIMYTIIWIGLNRFFLFLCRCT*Y 112
           LF++ I+ ++I+I  N FF +LCRC  Y
Sbjct: 25  LFALVIILSVIFI--NFFFFYLCRCCVY 50


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 192  FSVYIMYTIIWIGLNRFFLFLCRCT*YCPLKPYH-FHYLIVMYPR 61
            F V + YT+  + L  F LFL  C+     KPY+ F Y   + PR
Sbjct: 1044 FEVKMAYTVRQLSLKVFLLFLKSCS-DVDFKPYNVFIYTAFVVPR 1087


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 197 IFLVFTLCIQLYG 159
           IFLVF +CI L+G
Sbjct: 202 IFLVFVICINLFG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,536
Number of Sequences: 5004
Number of extensions: 38818
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)