Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M14
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical pr...    35   0.032
Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    31   0.69 

>Z75543-4|CAA99871.1|  383|Caenorhabditis elegans Hypothetical
           protein K01D12.4 protein.
          Length = 383

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -1

Query: 187 CLHYVYNYMDRLKSIFFVLV*MYLILSTKTVP-FSLFDS--YVPSIYFCFMLFSII 29
           C  ++ N+   +  +FF+L  M L+L T +   +S+ ++  Y+ S+YFCF+ F+ I
Sbjct: 219 CGGHMDNWRPSVYKVFFILFSMCLVLITASAGIYSVVENWNYIDSLYFCFISFATI 274


>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 268 FFLIISLDVFLFVLCTRLEFGIYRS-F*CLHYVYN 167
           F L+I+L  FL V C  L F IYR+ F  LH  YN
Sbjct: 52  FHLLIAL--FLSVFCKTLNFAIYRAGFRLLHMCYN 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,687
Number of Sequences: 27780
Number of extensions: 212684
Number of successful extensions: 471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)