Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M14
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.6  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   3.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   3.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   3.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 422 IIIKYTTDFSFRLLVXIXKDEISFCTCLIITIDVRXTNCIN-YRQLSN 282
           III   TD   R+      D+ S    + + IDV   NC N Y  +S+
Sbjct: 146 IIIDLKTDKILRIYPLKSSDQTSDSFFVDLVIDVDPNNCDNTYAYISD 193


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 210 NSKRVQSTNKNTSKEIIRKKSAHFVR*LPIVYTICXPYIYGN 335
           ++K + + N N  K  ++  + +++  +P+   I  P  YGN
Sbjct: 86  SNKTIHNNNNNYKK--LQYYNINYIEQIPVPVPIPVPVYYGN 125


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 210 NSKRVQSTNKNTSKEIIRKKSAHFVR*LPIVYTICXPYIYGN 335
           ++K + + N N  K  ++  + +++  +P+   +  P  YGN
Sbjct: 86  SNKTIHNNNNNYKK--LQYYNINYIEQIPVPVPVPVPVYYGN 125


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 210 NSKRVQSTNKNTSKEIIRKKSAHFVR*LPIVYTICXPYIYGN 335
           ++K + + N N  K  ++  + +++  +P+   +  P  YGN
Sbjct: 86  SNKTIHNNNNNYKK--LQYYNINYIEQIPVPVPVPVPVYYGN 125


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 210 NSKRVQSTNKNTSKEIIRKKSAHFVR*LPIVYTICXPYIYGN 335
           ++K + + N N  K  ++  + +++  +P+   +  P  YGN
Sbjct: 86  SNKTIHNNNNNYKK--LQYYNINYIEQIPVPVPVPVPVYYGN 125


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 210 NSKRVQSTNKNTSKEIIRKKSAHFVR*LPIVYTICXPYIYGN 335
           ++K + + N N  K  ++  + +++  +P+   +  P  YGN
Sbjct: 319 SNKTIHNNNNNYKK--LQYYNINYIEQIPVPVPVPVPVYYGN 358


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 228 SVLV*SLAFIDLFSVYIMYTIIWIGLNRFFLFL 130
           SVL+   AF+ +  VYI+  II+I  N +  F+
Sbjct: 394 SVLIGWSAFLCISLVYIIMLIIFIPRNIYENFI 426


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 197 IFLVFTLCIQLYGSA*IDFFCSCVDVLNI 111
           + L+FTLCI  Y     D    C+   N+
Sbjct: 5   VILLFTLCIVSYMMVRCDDITLCLKQENL 33


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 114 IKYIYTRTKKIDLSRS 161
           IKY +T  KK+ L RS
Sbjct: 68  IKYSHTHEKKLVLERS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,873
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)