Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M13
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    56   4e-09
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   7.2  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    26   7.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    25   9.5  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 48/174 (27%), Positives = 76/174 (43%)
 Frame = -1

Query: 798 DPRFLPSLELLXDACRDKVDVDIITGDILKTDLSQFIPNDAKVHWLDPPPPVHLIGNLPF 619
           DPR    +         +  + ++ GD++KTDL  F   D              + N P+
Sbjct: 81  DPRMAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF---DV------------CVSNTPY 125

Query: 618 SVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMAARILDKQRCRLSVMCQSWC 439
            +S+ L+ + L+   +   P         L FQ+E A R+ AR  D   CRLS   Q W 
Sbjct: 126 QISSPLVFKLLQ---QRPAP-----RAAILMFQREFALRLVARPGDPLYCRLSANVQMWA 177

Query: 438 TVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMRQK 277
            VK+   +    F P P V+  VV + P K+P   L F+  + ++R +F  + K
Sbjct: 178 HVKHIMKVGKNNFRPPPLVESSVVRIEP-KNPPPPLAFEEWDGLLRIVFLRKNK 230


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 378 VGVVTLTPLKHPIIKLPFKLAEKVV 304
           V +V LTPL HP++ +P+  A KVV
Sbjct: 95  VYLVILTPLPHPML-IPYLFAPKVV 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 354 LKHPIIKLPFKLAEKVVRQIFSMRQKY 274
           L+HP++K  FK    + R+I +M ++Y
Sbjct: 442 LQHPLVKEQFKRFAHMQREIVAMSEQY 468


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 493 GSHSLCNFFLKSKSHSCSPKQ 555
           GSH   N++  S S SC P+Q
Sbjct: 142 GSHGYFNYYGASSSRSCIPQQ 162


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = -1

Query: 786 LPSLELLXDACRDKVDVDIITGDILKTDL---SQFI--PNDAKV--HWLDPPPPVHLIGN 628
           LP L  L      K+ VD I  + +  D    ++F+  P +A V   + +     H I N
Sbjct: 123 LPFLRTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICN 182

Query: 627 LPFSVSTILIIRWLEMIS 574
           +P ++   L I+WLE ++
Sbjct: 183 MPTNIEGELAIKWLEFVN 200


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
 Frame = +1

Query: 25  FHSQFTSSACLXFVFFFGCSVIIMLKLRLL---LYAXIVCFT*S-GKFHIGYLKRPGHRV 192
           F S F+S   L F  FF CS    L    +   L+A +  F+ +        LK P H  
Sbjct: 7   FASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHH 66

Query: 193 NISNVVHF*SYLFSHFFWEQRLSTPYRILLSH*KYLTDNFLSKFKWQFYYWMF 351
           +   +  F  + F  FF+       +  +  H  Y   N +  F + FY+ +F
Sbjct: 67  HTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIH-PY-DSNVVPFFCFFFYFSLF 117


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 288 MRQKYSIRGAQTLFPE-EVREEVALKMYNIADIDPVTRPFQITNMEFARLCEAYNXSIKQ 112
           +R K  +   Q+L  +  V     +KM  ++    + +  +   M +++LCEA+  ++K 
Sbjct: 73  LRAKRRLYKNQSLMKKTSVSTSNTVKMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKV 132

Query: 111 QPEFE 97
             EF+
Sbjct: 133 AKEFQ 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,575
Number of Sequences: 5004
Number of extensions: 76038
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)