Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M13
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...   171   5e-43
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81586-5|CAB04696.1|  484|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81593-4|CAB04742.1|  334|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score =  171 bits (416), Expect = 5e-43
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 5/236 (2%)
 Frame = -1

Query: 798 DPRFLPSLELLXDACRDKVDVDIITGDILKTDLSQFIPNDA----KVHWLDPP-PPVHLI 634
           D RF+P L+ L +A   ++ +     D L+T++     N+      V W D   P +H+I
Sbjct: 82  DNRFIPPLQHLAEAADSRMFIH--HQDALRTEIGDIWKNETARPESVDWHDSNLPAMHVI 139

Query: 633 GNLPFSVSTILIIRWLEMISKHEGPWLFGRTRMTLTFQKEVAERMAARILDKQRCRLSVM 454
           GNLPF++++ LII++L  +S   G W +GR  +TLTFQ EVA+R+ + I    R R+S+M
Sbjct: 140 GNLPFNIASPLIIKYLRDMSYRRGVWQYGRVPLTLTFQLEVAKRLCSPIACDTRSRISIM 199

Query: 453 CQSWCTVKYNFDIPGTAFLPKPDVDVGVVTLTPLKHPIIKLPFKLAEKVVRQIFSMRQKY 274
            Q     K  F I G+ F+P+P VDVGVV   P K P++   F++ EKV RQ+F  RQKY
Sbjct: 200 SQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKVCRQVFHYRQKY 259

Query: 273 SIRGAQTLFPEEVREEVALKMYNIADIDPVTRPFQITNMEFARLCEAYNXSIKQQP 106
             +G +TL+PEE+ +E++  +     IDP T   ++   +FA L E YN    + P
Sbjct: 260 VTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQFADLAEGYNEQCIRYP 315


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 33/85 (38%), Positives = 43/85 (50%)
 Frame = -1

Query: 531 LTFQKEVAERMAARILDKQRCRLSVMCQSWCTVKYNFDIPGTAFLPKPDVDVGVVTLTPL 352
           L FQKE A+R+ AR  DK   RLSV  Q    V+    +  T F P P VD  VV + P 
Sbjct: 147 LMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDSAVVRIAP- 205

Query: 351 KHPIIKLPFKLAEKVVRQIFSMRQK 277
           K+P   + F   E ++R  F  + K
Sbjct: 206 KNPPPPVNFVEWEGLLRLCFMRKNK 230


>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 190 VNISNVVHF*SYLFSHFFWEQRLSTPYRILLSH*KYLTDNFLSKFKW 330
           +N++ V ++   +F+HF WE     P  I L+  + + + FL K  W
Sbjct: 260 MNVTEVPNW-LIMFAHFTWEFIHGAPVFIYLALNRMIRERFLEKMHW 305


>Z81586-5|CAB04696.1|  484|Caenorhabditis elegans Hypothetical
           protein T05F1.7 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 180 RPFQITNMEFARLCEAYNXSIKQQPEFEHDDDRATKKENEAETCRGSELRMEQCKL 13
           R  +  +M  +RL E      K   E + + DRA +    AE  R SEL  ++ KL
Sbjct: 311 RESEALHMNKSRLFEEKEALQKTADECQREADRAAQNLRNAENIRISELNRQERKL 366


>Z81593-4|CAB04742.1|  334|Caenorhabditis elegans Hypothetical
           protein T20B3.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 472 VQVISYVSILVHCKIQF*YTRYCIFAE 392
           + VISY+SI VHC     Y  +C+FA+
Sbjct: 22  LHVISYISIPVHC-----YGGFCVFAK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,278,359
Number of Sequences: 27780
Number of extensions: 433398
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)