Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M12
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    29   0.43 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    28   1.0  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   1.3  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   3.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.3  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   7.1  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   9.3  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   9.3  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 464 DMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRF-QISTNVVLNKPLNDMGVYDIFQ 288
           D++      NL++    LQ  V++F +    ++   F QI +  + N   +D  + D+ +
Sbjct: 48  DLFMGLTRQNLEEKVNSLQDSVENFEIIHESLRFTVFYQILSQFMQNICFHDFTIQDLLK 107

Query: 287 PDLANFQRI 261
           PD    Q I
Sbjct: 108 PDRNRLQLI 116


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -3

Query: 470 IADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRF--QISTNVVLNKPLND 312
           +  +Y+N   +  K  F     + D FGLE  +  LP     + ++  L  P ND
Sbjct: 294 LGPVYENSGHLPSKSHFSSTDSNTDSFGLESDERSLPSVSNDLKSSETLKNPRND 348


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 455 KNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRF 354
           ++F D ++KD+F +LQKD+    +E     LP F
Sbjct: 274 QDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMF 307


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 175 VDAEATVPDSVTSISALCTMADTNI 249
           +DA  T PD++  +S  CT+  T I
Sbjct: 50  IDASFTDPDAIVELSKKCTLLTTEI 74


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 332 LNKPLNDMGVYDIFQPDLANFQR 264
           L++   D+ V+  FQP LANF++
Sbjct: 253 LDETETDVEVFSCFQPQLANFKK 275


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 78  YHSGGRFLHYEVNKGPIRVECGRRNPIGK 164
           Y  G  + H E  K P+     RRNP GK
Sbjct: 262 YTVGPHYSHAETRKSPVVDGIVRRNPHGK 290


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 295 MSYTPMSFNGLFRTTLVLIWNL 360
           +SY  MSF G+    L LIWN+
Sbjct: 325 LSYPVMSFYGVRGILLKLIWNI 346


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 624 PTGNRQREHDVPERTVPVLKP 562
           PT  +  +H +P RT PV+KP
Sbjct: 11  PTSLQFNKHILPTRTKPVVKP 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,652
Number of Sequences: 5004
Number of extensions: 49397
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)