Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M07
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   4.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   6.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.5  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 281 PSTAFAILTCQNALKR*NQNSQQQTYLVFMDLKFMDALEIVHLPPFFFGML*VL 120
           P++ F IL  +  +   + N ++   L+FMD K         +PP+F+ +L VL
Sbjct: 617 PASFFTILN-RRRVSDISVNFKRSADLIFMDCKRSVINTTTRIPPYFWVLLIVL 669


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 2    CHLFIT*TIFLPSHXRKASSFIVHFKXAKSYATTCIY 112
            C+L++T  +FL     +++      K A SY T+ I+
Sbjct: 1077 CYLYLTLKVFLSISSNRSALLYQLLKLANSYETSTIF 1113


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/38 (23%), Positives = 24/38 (63%)
 Frame = +1

Query: 616 LILCSIRGIKKIKLEVSQQPTVIR*RANLLWYTSFTVV 729
           ++ C+++ + +I    SQ+P + + RA+ L++ +  V+
Sbjct: 580 ILFCALQSLSEIANMFSQRPIIAKHRASALYHPAADVI 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,814
Number of Sequences: 5004
Number of extensions: 60674
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)