Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M06
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   3.9  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   3.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   9.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 109 AGSTPLQCNK 80
           AGS P QCNK
Sbjct: 254 AGSKPFQCNK 263



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 485 ASLNLTPDGNHDSLRTSGV*LSDLRLKATLRVEH 384
           AS N  PD N D LR   + L    L ++   EH
Sbjct: 134 ASPNRKPDDNQDHLRRLEMSLEKSGLFSSKTSEH 167


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 109 AGSTPLQCNK 80
           AGS P QCNK
Sbjct: 12  AGSKPFQCNK 21


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 242 VSNKKIFIRKIFEISHF 292
           + N + FIRK  E++H+
Sbjct: 369 IENLQAFIRKHVELAHY 385


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 657 DMKLISHFYCVTVT 616
           +++ I +FYCV++T
Sbjct: 52  NLRRIYYFYCVSIT 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,593
Number of Sequences: 336
Number of extensions: 2704
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)