Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M05
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.29 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   3.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   3.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.7  

>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 244 YRILKQNLTSLNRILEWLVVEIE 312
           Y+I +QN+ SLN++ EWL+  +E
Sbjct: 141 YKINEQNVQSLNKVKEWLLKSLE 163


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 86  YDNINLGVSITVVSSYIFLLPLXGRRAYG 172
           + N+N G+ +TV   ++F + + G + YG
Sbjct: 190 WTNLNSGIWVTVFIVFLFFINIFGVKGYG 218


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 522 QKKHQKYFSSYTYSIRNLDDL 584
           Q KH    S Y YS+RN++ L
Sbjct: 925 QSKHTSLESQYNYSLRNIEQL 945


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 280 RILEWLVVEIEMIMIMVPSKRAHTSHYHQY*ICCT 384
           +ILEW   +  + + M P K    S Y +Y +C T
Sbjct: 740 KILEWKSTDDTINLPMNPHKSLEASLYEKYDLCIT 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,495
Number of Sequences: 5004
Number of extensions: 56320
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)