Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M05
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0083 + 6628116-6628310,6628383-6629057                           30   1.6  
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645...    28   8.6  

>02_02_0083 + 6628116-6628310,6628383-6629057
          Length = 289

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 180 SGGPYARLPXKGNKKIYDETTVIETPRLMLSYL*ASMRTYHPVVMTEPTQ 31
           S GP  R P +GNK+   +  V+   RLM++ L     T+   V+  P +
Sbjct: 226 SNGPETRAPSEGNKQCPGKDMVVAVGRLMVAELFRRYDTFAADVVEAPVE 275


>04_04_1138 -
           31162440-31163488,31163910-31164164,31164386-31164500,
           31164523-31164579,31164580-31164632,31164721-31164981,
           31165243-31165293,31165395-31165430,31165815-31166040,
           31166082-31166132,31166346-31166465
          Length = 757

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 83  RYDNINLGVSITVVSSYIFLLPLXGRRAYGPPDGEWLSSPM 205
           +  N N+   + V+ S I L+ L   + YG     WL +P+
Sbjct: 153 KVQNPNMSTDVVVIVSVIILIGLFSMQHYGTDKVGWLFAPI 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,573,810
Number of Sequences: 37544
Number of extensions: 335072
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)