Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M03
         (335 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   0.65 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   1.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   1.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   2.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   3.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    20   8.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   8.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -3

Query: 210 IRC*CFSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEXSAAEKXFCAQK 37
           + C  +S R   G   R   +     K+G+PTA   R  +A   A+ +  +  F   +
Sbjct: 194 VYCTRYSDRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAENR 251


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 142 QVKRNVPTATTAIAPSAK 195
           QVKRNVP  T    P A+
Sbjct: 201 QVKRNVPKPTVPKIPPAE 218


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 142 QVKRNVPTATTAIAPSAK 195
           QVKRNVP  T    P A+
Sbjct: 201 QVKRNVPKPTVPKIPPAE 218


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 113 AVGEPSFLATK*REMFRPPQPPS 181
           +V EP+   T   E  RPP  PS
Sbjct: 398 SVPEPTISTTPRPEWARPPSTPS 420


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 56  FSAALCSATIFADSRLE 106
           F  A+C+ T+FA  + E
Sbjct: 9   FILAICACTVFAQQQAE 25


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +1

Query: 295 WNTLHGHRP 321
           W T++ HRP
Sbjct: 528 WQTVYNHRP 536


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 142 QVKRNVPTAT 171
           QVKRNVP  T
Sbjct: 201 QVKRNVPKPT 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,785
Number of Sequences: 336
Number of extensions: 1449
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)