Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_M03
(335 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80735-1|AAB91434.1| 744|Homo sapiens CAGF28 protein. 29 2.7
BX538201-1|CAD98066.1| 675|Homo sapiens hypothetical protein pr... 29 2.7
BC033781-1|AAH33781.1| 757|Homo sapiens PAXIP1 protein protein. 29 2.7
BC008328-1|AAH08328.1| 391|Homo sapiens PAXIP1 protein protein. 29 2.7
AK123600-1|BAC85657.1| 1035|Homo sapiens mRNA. protein. 29 2.7
AC093726-1|AAP21865.1| 698|Homo sapiens unknown protein. 29 2.7
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 29 3.6
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 29 3.6
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 29 3.6
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 29 3.6
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 29 3.6
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 29 3.6
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 29 3.6
BX537849-1|CAD97857.1| 1626|Homo sapiens hypothetical protein pr... 29 4.7
AY362728-1|AAR13367.1| 2677|Homo sapiens ataxia/oculomotor aprax... 29 4.7
AL353701-2|CAM14151.1| 2677|Homo sapiens senataxin protein. 29 4.7
AL159997-2|CAI40854.1| 2677|Homo sapiens senataxin protein. 29 4.7
AB014525-1|BAA31600.2| 2663|Homo sapiens KIAA0625 protein protein. 29 4.7
AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation ... 28 8.2
>U80735-1|AAB91434.1| 744|Homo sapiens CAGF28 protein.
Length = 744
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 1 IDSKHKRVHVSLLLRTKXFFRCTXFCYYLRRFAP*APCGGGTFLS 135
++ KR HVS L + K F+ C L C GG LS
Sbjct: 635 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 679
>BX538201-1|CAD98066.1| 675|Homo sapiens hypothetical protein
protein.
Length = 675
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 1 IDSKHKRVHVSLLLRTKXFFRCTXFCYYLRRFAP*APCGGGTFLS 135
++ KR HVS L + K F+ C L C GG LS
Sbjct: 566 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 610
>BC033781-1|AAH33781.1| 757|Homo sapiens PAXIP1 protein protein.
Length = 757
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 1 IDSKHKRVHVSLLLRTKXFFRCTXFCYYLRRFAP*APCGGGTFLS 135
++ KR HVS L + K F+ C L C GG LS
Sbjct: 648 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 692
>BC008328-1|AAH08328.1| 391|Homo sapiens PAXIP1 protein protein.
Length = 391
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 1 IDSKHKRVHVSLLLRTKXFFRCTXFCYYLRRFAP*APCGGGTFLS 135
++ KR HVS L + K F+ C L C GG LS
Sbjct: 282 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 326
>AK123600-1|BAC85657.1| 1035|Homo sapiens mRNA. protein.
Length = 1035
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 1 IDSKHKRVHVSLLLRTKXFFRCTXFCYYLRRFAP*APCGGGTFLS 135
++ KR HVS L + K F+ C L C GG LS
Sbjct: 926 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 970
>AC093726-1|AAP21865.1| 698|Homo sapiens unknown protein.
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 1 IDSKHKRVHVSLLLRTKXFFRCTXFCYYLRRFAP*APCGGGTFLS 135
++ KR HVS L + K F+ C L C GG LS
Sbjct: 589 LEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLS 633
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 283 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 341
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL--VLKH*QRMCCCPAN*NSWSSQN-GNLFVA 271
++ ++ GEP ++F+PPQPP+R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BX537849-1|CAD97857.1| 1626|Homo sapiens hypothetical protein
protein.
Length = 1626
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 144 LVARKEGSPTARSSRRESAKIVAEXSAAEKXFCAQKKTDVYTLV 13
+ A KEG P + S E + + + C+Q + D Y L+
Sbjct: 1477 MAALKEGEPDSSSDAEEDNLFLTQNDPEDMDLCSQMENDNYKLI 1520
>AY362728-1|AAR13367.1| 2677|Homo sapiens ataxia/oculomotor apraxia
protein 2 protein.
Length = 2677
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 144 LVARKEGSPTARSSRRESAKIVAEXSAAEKXFCAQKKTDVYTLV 13
+ A KEG P + S E + + + C+Q + D Y L+
Sbjct: 1477 MAALKEGEPDSSSDAEEDNLFLTQNDPEDMDLCSQMENDNYKLI 1520
>AL353701-2|CAM14151.1| 2677|Homo sapiens senataxin protein.
Length = 2677
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 144 LVARKEGSPTARSSRRESAKIVAEXSAAEKXFCAQKKTDVYTLV 13
+ A KEG P + S E + + + C+Q + D Y L+
Sbjct: 1477 MAALKEGEPDSSSDAEEDNLFLTQNDPEDMDLCSQMENDNYKLI 1520
>AL159997-2|CAI40854.1| 2677|Homo sapiens senataxin protein.
Length = 2677
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 144 LVARKEGSPTARSSRRESAKIVAEXSAAEKXFCAQKKTDVYTLV 13
+ A KEG P + S E + + + C+Q + D Y L+
Sbjct: 1477 MAALKEGEPDSSSDAEEDNLFLTQNDPEDMDLCSQMENDNYKLI 1520
>AB014525-1|BAA31600.2| 2663|Homo sapiens KIAA0625 protein protein.
Length = 2663
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 144 LVARKEGSPTARSSRRESAKIVAEXSAAEKXFCAQKKTDVYTLV 13
+ A KEG P + S E + + + C+Q + D Y L+
Sbjct: 1463 MAALKEGEPDSSSDAEEDNLFLTQNDPEDMDLCSQMENDNYKLI 1506
>AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 101 LELRAVGEPSFLATK*REMFRPPQPPSRL 187
++ ++ GEP ++F+PPQPP+R+
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARM 314
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,422,333
Number of Sequences: 237096
Number of extensions: 926917
Number of successful extensions: 1992
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1992
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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