Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_M02
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 128 6e-31
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 49 8e-07
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 46 6e-06
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 43 4e-05
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 29 0.94
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.94
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 2.2
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 5.0
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 26 5.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 5.0
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 6.6
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 25 8.7
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 8.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.7
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 128 bits (310), Expect = 6e-31
Identities = 69/216 (31%), Positives = 115/216 (53%)
Frame = -3
Query: 705 ILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLEIEIGEKK 526
ILS FWP LP +K+ +AY + Y K R L + P+LG+V LEIE+ ++
Sbjct: 462 ILSRLFWPTLSVRYFHLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIELEDRT 521
Query: 525 LDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQSMGLIAEKSTDHFV 346
L LTV+P A I F+ S +++ +++ P I+ R + +W ++ + D +
Sbjct: 522 LTLTVTPEQAAFISLFEETSTLHIEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYR 581
Query: 345 LVEADNKASVPSHQVQEMICEDEETESAMASAHDQREGELQVFWSYIVGMLTNLDCLPLD 166
+ E + + + E + ++ + SA+ S + E++V+WS++VGMLTNL L L+
Sbjct: 582 VRETEAETAT------ETVLDEIQGVSAVQSEAESSAAEMRVYWSFVVGMLTNLGALELE 635
Query: 165 RIHQMLKMFASQAPGTECSLMELRQFLDTKVRTHQL 58
RIH ML MF G + ELR+FL ++ +L
Sbjct: 636 RIHNMLTMFIPPPNGYTRTQSELREFLALMIKEEKL 671
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 48.8 bits (111), Expect = 8e-07
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = -3
Query: 705 ILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGN--VNLEIEIGE 532
+LS +WP + + + LP+++++ + + K Y + + + +SW LG+ V +G
Sbjct: 499 VLSQAYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGN 558
Query: 531 KKLDLTVSPFNATLIMHFQN 472
K +L++S F A +++ F N
Sbjct: 559 K--ELSISLFQACVLLQFNN 576
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = -3
Query: 714 NAMILSAQFWP----PFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLE 547
N IL++ FWP P K + P+ + + +T Y + R L W P +G+ ++
Sbjct: 540 NVSILASTFWPIDLSPHKIKC-NFPKVLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADVR 598
Query: 546 IEIGEKKLDLTVSPFNATLIMHFQNKSE 463
+ ++K DL VS + +++ FQ+ E
Sbjct: 599 VNFKDRKYDLNVSTIASVILLLFQDLKE 626
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = -3
Query: 714 NAMILSAQFWPPFKDE-SLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLEIEI 538
+A++L FWP + + LPEE+ +E + Y + R LSW HL ++ I
Sbjct: 530 SALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARI 589
Query: 537 GEK---KLDLTVSPFNATLIMHFQNKSEWTLDELHQV 436
+ VS + +++ + ++ +T +EL ++
Sbjct: 590 NPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKI 626
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 558 VNLEIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQSMG 379
V LE + + LDL + N + ++ K+E T D+L +V + + +R Y SM
Sbjct: 1229 VFLERPLSQTPLDLPETLENTQIDIYPSFKTESTDDQLEKVTQTNVASNKRVAPYADSMA 1288
Query: 378 LIAEKSTDHF 349
+ +D F
Sbjct: 1289 NVGSPESDCF 1298
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 540 IGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPIT-ILRRKITYWQSMGLIAEK 364
+ K L + + N I+ F +S+ + +++ V T IL I W S+ + E+
Sbjct: 594 VAAKVLPIFIKGPNNLDIVEFHKESKALIFNTLKILAVENTAILETVILSWISLSRVVEE 653
Query: 363 STDHFVLVE 337
HFVL+E
Sbjct: 654 EELHFVLLE 662
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 226 ASFLVLYCRHVNKLGLFAFGQNTSNVEDVCFP--SSRH 119
AS V+YC NKL F N ++V + FP SSR+
Sbjct: 125 ASLKVIYCLFCNKLEFFNADMNAASVLNNLFPPASSRN 162
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = -3
Query: 561 NVNLEIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQSM 382
N L IE +K L + +NA + + S L E + I I + + WQ +
Sbjct: 17 NYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEAYLDAIKIDEKAVLAWQGL 76
Query: 381 GLIAEKSTD 355
+ E + D
Sbjct: 77 WNLYESTHD 85
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = -3
Query: 477 QNKSEWTLDELHQVMKVPITILRRKITYWQSMGLIAEKSTDHFVLVEADNKASVPSHQVQ 298
++KS W L +QV VPI K++ K D +++D + + Q
Sbjct: 111 ESKSPWILSRPNQVEAVPI-----KLSNKNGQSASKNKILD---FLKSDKENLISGDDDQ 162
Query: 297 EMICEDEETESAMASAHD 244
E+I EDE + SAHD
Sbjct: 163 ELIDEDELLDE---SAHD 177
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 684 PPFKDESLELPEEIKEHFEAYTKSYEA 604
P FK E L + EE+K+H++ +S A
Sbjct: 1067 PRFKTEYLNVAEEVKKHYDNDLRSIMA 1093
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 279 HLHKSFPVLDVKVHWLYYQLQLKQSDLY 362
HL KS + K+ +YQL KQ +L+
Sbjct: 36 HLRKSVNIPSEKISKCWYQLPAKQEELF 63
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 516 TVSPFNATLIMHFQNKSEWTLDELHQVMKVPITIL 412
TV P+ ++I F + + DE+ ++ K+P+ L
Sbjct: 203 TVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFL 237
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 8.7
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = -3
Query: 516 TVSPFNATLIMHFQN-KSEWTLDELHQVMKVPITILRRKITYWQSMGLIAEKSTDHFVLV 340
++ P + L + N ++ T + LH P + R ++ +++GL EKS +
Sbjct: 281 SIQPSDDPLSLEVANSETVSTSNSLHDPSAEPYPVNRSSLSNLRNLGLALEKSYASLLSK 340
Query: 339 EADN--KASVPSHQVQEMICEDE-ETESAMASAHDQREGELQVFWS 211
A++ K+S S E + + E ++ A D + GE+++ S
Sbjct: 341 VANHTAKSSEDSSNSVEFVGDPPLERFLTVSDASDLKIGEIELLLS 386
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 380 PIDCQYVIFLLRIVIGTFIT*WSSSNVHSDLFWKCIINVALKGETVRSNFFS 535
P+ CQ + ++R +I F +++N D C++ +L+ + N+FS
Sbjct: 1451 PLFCQTEMKIVRALIDLFHLLPNNANRFMDELLICVVEFSLRLQRTFPNYFS 1502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,969
Number of Sequences: 5004
Number of extensions: 64912
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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