Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_M02
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 52 6e-07
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 52 6e-07
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 40 0.001
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 40 0.001
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 36 0.031
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 34 0.12
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 33 0.22
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 33 0.22
Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z81563-3|CAB04565.1| 222|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z99710-5|CAB16866.1| 662|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z99710-4|CAB16865.1| 660|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical pr... 29 4.7
AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical ... 29 4.7
U23519-9|ABS19470.1| 203|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z99710-3|CAB16864.1| 679|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z47070-4|CAA87342.1| 363|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = -3
Query: 744 IEELNK-KFTXNAMILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPH 568
+E +NK K A +++ ++WP + + +P+E+++ Y Y GNR + W
Sbjct: 546 LEHMNKEKANFTARVITPEYWPTYDTYEINIPKEMRDTLTDYQDFYRVQHGNRNVKWHHG 605
Query: 567 LGN--VNLEIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKV 427
L + ++ G KK +L + + +++ F WT+ E+ + K+
Sbjct: 606 LASAVISASFRPGCKK-ELIATMYQTVILLLFNKCETWTVAEIVEHTKI 653
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = -3
Query: 744 IEELNK-KFTXNAMILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPH 568
+E +NK K A +++ ++WP + + +P+E+++ Y Y GNR + W
Sbjct: 583 LEHMNKEKANFTARVITPEYWPTYDTYEINIPKEMRDTLTDYQDFYRVQHGNRNVKWHHG 642
Query: 567 LGN--VNLEIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKV 427
L + ++ G KK +L + + +++ F WT+ E+ + K+
Sbjct: 643 LASAVISASFRPGCKK-ELIATMYQTVILLLFNKCETWTVAEIVEHTKI 690
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/101 (19%), Positives = 42/101 (41%)
Frame = -3
Query: 729 KKFTXNAMILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNL 550
K N ++LS+ WP F + LP+++ + E + + Y R L+W +
Sbjct: 536 KSVEFNVLVLSSGSWPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEI 595
Query: 549 EIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKV 427
KK T + ++ F + +T++++ K+
Sbjct: 596 TSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKM 636
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/101 (19%), Positives = 42/101 (41%)
Frame = -3
Query: 729 KKFTXNAMILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNL 550
K N ++LS+ WP F + LP+++ + E + + Y R L+W +
Sbjct: 536 KSVEFNVLVLSSGSWPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEI 595
Query: 549 EIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKV 427
KK T + ++ F + +T++++ K+
Sbjct: 596 TSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKM 636
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 35.9 bits (79), Expect = 0.031
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Frame = -3
Query: 675 KDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLEIEIGEKKLD------LT 514
K E +E E+++E +++E K + L W L N N ++E E+ L +T
Sbjct: 1188 KQEKVEELEKVQEQMLNLVQAFEVEKASIRLEWNSSLSNANEKLEAAEEALSQKENTIVT 1247
Query: 513 VSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQSMGLIAEK--STDHFVLV 340
+ T+ F+ + E Q M++ T+ + + +G + EK ++D V +
Sbjct: 1248 LESRIETISQQFEARLEEANVWKSQAMQLG-TLTQSLSQMQRQLGEMHEKMEASDRRV-I 1305
Query: 339 EADNKASVPSHQVQEMICEDEETESAMASAHDQ 241
E + +A H + + E++E A+ AH +
Sbjct: 1306 EVEEQA---QHDITLIQVENKEQSEALEQAHSR 1335
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/101 (17%), Positives = 40/101 (39%)
Frame = -3
Query: 729 KKFTXNAMILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNL 550
K N ++ + WP + LP E+ + + Y A R L+W +
Sbjct: 484 KSIDFNVILQTTGAWPSLDQIKIILPRELSTILKEFDTFYNASHNGRRLNWAYSQCRGEV 543
Query: 549 EIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKV 427
+ EKK V+ + F + +T++++ + +++
Sbjct: 544 NSKAFEKKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEM 584
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 705 ILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLE 547
+L+A WP + + LP+E+ +E +T+ Y R L+ LGN +++
Sbjct: 512 VLTAGVWPTVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVK 564
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 705 ILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLE 547
+L+A WP + + LP+E+ +E +T+ Y R L+ LGN +++
Sbjct: 512 VLTAGVWPTVQCNPVVLPQELSVAYEMFTQYYTEKHTGRKLTINTLLGNADVK 564
>Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical
protein F32B6.9 protein.
Length = 413
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -3
Query: 381 GLIAEKSTDHFVLVEADNKAS---VPSHQVQEMICEDEETESAMASAHDQREGELQVF 217
GL+ EK + A+N++S P H +Q ++ + EE AS +Q GEL++F
Sbjct: 162 GLLTEKEYQILEAMHAENESSRWITPLHWIQLIMRQVEEEHKPTASLFNQFVGELRIF 219
>Z81563-3|CAB04565.1| 222|Caenorhabditis elegans Hypothetical
protein K04H8.3 protein.
Length = 222
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 18 LCLRQFVHASLXVPVDVFLLLCLKIVSAP*DCIQCLELGKQTSSTFDV 161
LC Q H+S +FLLLC I D +Q + T+ST V
Sbjct: 7 LCSEQSFHSSSNTMKHIFLLLCFTIPIVAQDPVQDALISADTNSTAPV 54
>Z99710-5|CAB16866.1| 662|Caenorhabditis elegans Hypothetical
protein F08A8.4 protein.
Length = 662
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 267 SQFLHLHKSFPVLDVKVHWLYY----QLQLKQSDLYFFL-LLNPSIASTLFSF 410
+ LHLH ++ +LDV + L + QL + LY +L + PS S + SF
Sbjct: 557 TDLLHLHVNYELLDVATYALEFMSSTQLDYIRDQLYLYLEKIRPSAVSLVDSF 609
>Z99710-4|CAB16865.1| 660|Caenorhabditis elegans Hypothetical
protein F08A8.3 protein.
Length = 660
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 267 SQFLHLHKSFPVLDVKVHWLYY----QLQLKQSDLYFFL-LLNPSIASTLFSF 410
+ LHLH ++ +LDV + L + QL + LY +L + PS S + SF
Sbjct: 555 TDLLHLHVNYELLDVATYALEFMSSTQLDYIRDQLYLYLEKIRPSAVSLVDSF 607
>Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical
protein F28C6.5 protein.
Length = 219
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 129 LGKQ-TSSTFDV--FCPKANSPSLLTCLQYKTKKLAVHLPA--DHVLMPLHSQFLHLHKS 293
+GK TSS V F P +PS YK + L +H+P D V +PL + LH
Sbjct: 45 IGKDGTSSRLGVSPFYPADGNPSNPFPPIYKARPLPLHVPEPQDVVAVPLDEEALHGEPL 104
Query: 294 FP 299
FP
Sbjct: 105 FP 106
>AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical
protein Y97E10AL.2 protein.
Length = 345
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 238 PLIMC*CHCTLSFFIFTNHFLYLM*RYTGFIISFN 342
PL++C LS IF +Y + RYT FI N
Sbjct: 11 PLLLCITILVLSIVIFLPILVYFLPRYTQFIFFLN 45
>U23519-9|ABS19470.1| 203|Caenorhabditis elegans Hypothetical
protein F26G1.11 protein.
Length = 203
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 270 QFLHLHKSFPVLDVKVHWLYY 332
+++ H+S+P + + HWLYY
Sbjct: 129 RYMKAHRSWPQIHIYRHWLYY 149
>Z99710-3|CAB16864.1| 679|Caenorhabditis elegans Hypothetical
protein F08A8.2 protein.
Length = 679
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 267 SQFLHLHKSFPVLDVKVHWL----YYQLQLKQSDLYFFL-LLNPSIASTLFSF 410
+ LHLH ++ +LDV + L + QL + LY +L + P+ S + SF
Sbjct: 574 TDLLHLHVNYELLDVATYALEFMSFTQLDYVRDQLYLYLEKIRPNAVSLVDSF 626
>Z47070-4|CAA87342.1| 363|Caenorhabditis elegans Hypothetical
protein T09B9.5 protein.
Length = 363
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 235 FPLIMC*CHCTLSFFI 282
FPLI C HC SFF+
Sbjct: 101 FPLIFCYIHCAASFFL 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,763,308
Number of Sequences: 27780
Number of extensions: 358098
Number of successful extensions: 948
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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