Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_M01
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432     27   3.0  
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    27   4.0  
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    27   4.0  
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335...    27   4.0  
11_02_0089 + 8203056-8203535                                           26   6.9  
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710     25   9.2  
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333...    25   9.2  

>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
          Length = 314

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 300 RPADDDSVLVLTRNKQHVQQIRRFLRSIGRVSGRSKP*GSAGTSSA 163
           R +DD SV++ T   QH      F R +G  +  +   G+A  + A
Sbjct: 173 RSSDDPSVVITTYEGQHCHHTASFQRGVGGAAVAAHIHGAAAVALA 218


>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 15  LLFLTNVISCRGQRRVSDGNSSSSRGVWRYHGGY 116
           LL L    SC   R  S+ +SSSSR V R+  G+
Sbjct: 17  LLLLLVTCSCLSARERSNSSSSSSRRVVRHLPGF 50


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 149 CMGEIAELVPALP 187
           CMG++ EL PALP
Sbjct: 752 CMGDVVELTPALP 764


>05_01_0425 -
           3347604-3347708,3348394-3348466,3349917-3350581,
           3350609-3351088,3351253-3351534
          Length = 534

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 18  LFLTNVISCRGQRRVSDGNSSSSRGVWRYHGGY*AGCINVVQ 143
           LFL  VISC G  RV  G   +  G   ++GG   G +   Q
Sbjct: 129 LFLF-VISCAGCNRVDGGGERAGAGGVGWNGGEAVGAVTAQQ 169


>11_02_0089 + 8203056-8203535
          Length = 159

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 39  SCRGQRRVSDGNSSSSRGVWRYHGGY*AGCINVVQARVWEKLRSWFRRCLR 191
           SC GQRR     SSS+    R+H         +    V  KL S +R  LR
Sbjct: 3   SCHGQRRSGRATSSSTDTGIRWHQAVTGVPTIIAPCYVSTKLGSAYRPALR 53


>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
          Length = 640

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 96  WRYHGGY*AGCINVVQARVWEKLRSWFRRCLRVWSGQRHG 215
           WR  GG             W +  +W+RRC+    G RHG
Sbjct: 531 WRSIGGAARPATAKPGTAQWRQCVAWWRRCMA--GGGRHG 568


>02_01_0461 -
           3328662-3329087,3329124-3329201,3329370-3329597,
           3330181-3330204
          Length = 251

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 AGCINVVQARVWEKLRSWFRRCLRVWSGQRH 212
           AG  N  +AR W    S F++ + V  G+RH
Sbjct: 175 AGVANTARARQWRCCLSVFQQPVEVDHGRRH 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,917,606
Number of Sequences: 37544
Number of extensions: 110194
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)