Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_L21
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    28   1.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   1.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   3.3  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    25   7.6  

>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 426 KFRNLNCNSSHPSCDASMLVFKSRKQISNFSKNKS 322
           +FR+LN + +   C A  + +K    +SNFS  KS
Sbjct: 85  QFRDLNTSEALSPCKAEPIPYKIMSSMSNFSDFKS 119


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 419 RNLYSGFLLVSNSLTPSEP 475
           +NLY GF+ VS +L P+ P
Sbjct: 412 KNLYQGFITVSRTLVPNYP 430


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 143 AMSLFTHNAISKNNDYPTLTIIR*LNYNMILKA 45
           A  +F  +AISK+ DYP + +I+  N +  ++A
Sbjct: 423 AYRIFYADAISKSIDYPEMNVIKDKNKDSTVRA 455


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 108 FTYCIMSEQAHGSPVSGDHMVTP*MP*DMYCSLLFMFKPVCVSASQPTNARWWYLP 275
           F Y  ++E A+ SP+  D+      P  +     ++ +  CV A + T    + LP
Sbjct: 301 FDYLTVNENAYDSPMDADNREGVNSPGALSVEATYINQNFCVQALRETEEEKYKLP 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,442
Number of Sequences: 5004
Number of extensions: 53571
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)