Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_L19
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543...    31   1.2  
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594     30   2.1  
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901           28   6.5  
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927     28   8.6  

>06_03_0375 +
           20052687-20053214,20053943-20054110,20054272-20054354,
           20054541-20054610,20054973-20055077
          Length = 317

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 589 SSPPSHCTHTGALLLGSHYANFIAI 515
           +S P H TH   LLL  HY NF A+
Sbjct: 2   ASSPRHSTHHPTLLLRRHYPNFCAL 26


>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
          Length = 323

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 532 RNDYPTGGPLYECSGRAGSTRRDAPSP 612
           R D P  G  +EC GRAG   RD P+P
Sbjct: 122 RGDGPPPGNCFEC-GRAGHWARDCPNP 147


>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
          Length = 623

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 714 SVAAPTSGCCSITRSRGPRSQGGNVHSGXSVSEGWTR 604
           SV+ P + CCS+T        GG+  +  + S G T+
Sbjct: 106 SVSPPAAACCSLTSIENVADHGGDHLTAGACSSGTTQ 142


>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
          Length = 229

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 545 QQEGPCMSAVGGRARPGETRRVHPSDTLXPECTLPPCER 661
           ++EG   +A  G AR    RR HP   L P  T   CER
Sbjct: 74  RREGAEGAATAGSARNCRRRRHHPRIRLRPPPTRRHCER 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,806,842
Number of Sequences: 37544
Number of extensions: 493120
Number of successful extensions: 1465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)