Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_L13
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    28   4.5  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    28   4.5  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 88  EEYSERTEEDADPQPRHQEPRGQKRYLFE 174
           E+ +E+TE+   P P+ QE + +KR + E
Sbjct: 189 EKKTEKTEKSQSPVPQDQEKKNRKRPMIE 217


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 82  HHEEYSERTEEDADPQPRHQEPRGQKRYLFEHCS 183
           HH  +  R    +DPQ RHQ    Q+ YL +  S
Sbjct: 382 HHHHHHPRVSSSSDPQQRHQ---SQQHYLAQTVS 412


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 82  HHEEYSERTEEDADPQPRHQEPRGQKRYLFEHCS 183
           HH  +  R    +DPQ RHQ    Q+ YL +  S
Sbjct: 382 HHHHHHPRVSSSSDPQQRHQ---SQQHYLAQTVS 412


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 214 VFGNFSTQHSMNNVRTDSVSAHVVPDGVAGGLRPLQSVR 98
           VFGN ST  SM N+ ++ +S+  +PD    GL  L  +R
Sbjct: 121 VFGNLSTLMSM-NLNSNQISS--IPDKAFNGLSALTQLR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,178
Number of Sequences: 27780
Number of extensions: 241278
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)