Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_L11
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   0.89 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   0.89 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 TNTRVLETIKTTENNKYFTLPRQ 252
           TNT++LE  K    NKY   PR+
Sbjct: 12  TNTQLLELEKEFHFNKYLCRPRR 34


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 TNTRVLETIKTTENNKYFTLPRQ 252
           TNT++LE  K    NKY   PR+
Sbjct: 143 TNTQLLELEKEFHFNKYLCRPRR 165


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 597 HYTKNTFNSRIHSNASCSTYLGTPNS 520
           HY+KNT+N + +  A     LG P+S
Sbjct: 345 HYSKNTYNEQGNKLADLYKSLG-PDS 369


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 597 HYTKNTFNSRIHSNASCSTYLGTPNS 520
           HY+KNT+N + +  A     LG P+S
Sbjct: 237 HYSKNTYNEQGNKLADLYKSLG-PDS 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,759
Number of Sequences: 336
Number of extensions: 2335
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)