Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_L11
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0065 + 22456225-22456744,22456813-22457768                       29   2.2  
02_04_0349 + 22222091-22222639,22222718-22223695                       28   5.2  
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336...    28   6.8  
04_03_0369 + 15012906-15014417                                         28   6.8  
04_03_0323 - 14364145-14365656                                         28   6.8  
06_01_0823 + 6216492-6217002,6217140-6218083                           27   9.0  
04_03_0381 - 15163425-15164903                                         27   9.0  
04_03_0380 - 15150814-15152304                                         27   9.0  
04_03_0348 + 14735581-14737071                                         27   9.0  
04_03_0347 + 14723118-14724548                                         27   9.0  

>04_04_0065 + 22456225-22456744,22456813-22457768
          Length = 491

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS V S
Sbjct: 367 CPQEAVLRHEAVGVFLTHSGWNSTVES 393


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV + L+H+ WNS + S
Sbjct: 383 CPQEAVLRHEAVALFLTHSGWNSTLES 409


>04_03_0370 +
           15030829-15030837,15031579-15031957,15033434-15033626,
           15033859-15034102,15035383-15035445
          Length = 295

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 458 GNNTINHHSAVVVALSHNSWNSCVAS 381
           G + +  H AV V L+H+ WNS + S
Sbjct: 2   GEDKVLEHDAVGVFLTHSGWNSTLES 27


>04_03_0369 + 15012906-15014417
          Length = 503

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS + S
Sbjct: 371 CPQEKVLEHDAVGVFLTHSGWNSTLES 397


>04_03_0323 - 14364145-14365656
          Length = 503

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS + S
Sbjct: 371 CPQEKVLEHDAVGVFLTHSGWNSTLES 397


>06_01_0823 + 6216492-6217002,6217140-6218083
          Length = 484

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 530 HRILKMRRVTSFSALTTARC--S*LCGNNTINHHSAVVVALSHNSWNSCVAS 381
           H ++       F A T  RC  +  C    +  H AV   L+H+ WNS   S
Sbjct: 334 HDVVTNALPDGFVAETKGRCFIAEWCAQEEVLRHRAVGGFLTHSGWNSTTES 385


>04_03_0381 - 15163425-15164903
          Length = 492

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS + S
Sbjct: 361 CPQEQVIEHPAVGVFLTHSGWNSTLES 387


>04_03_0380 - 15150814-15152304
          Length = 496

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS + S
Sbjct: 367 CPQEQVIEHPAVGVFLTHSGWNSTLES 393


>04_03_0348 + 14735581-14737071
          Length = 496

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS + S
Sbjct: 367 CPQEQVIEHPAVGVFLTHSGWNSTLES 393


>04_03_0347 + 14723118-14724548
          Length = 476

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 461 CGNNTINHHSAVVVALSHNSWNSCVAS 381
           C    +  H AV V L+H+ WNS + S
Sbjct: 345 CPQEQVIEHPAVGVFLTHSGWNSTLES 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,168,284
Number of Sequences: 37544
Number of extensions: 215612
Number of successful extensions: 455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)