Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_L05
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 254 3e-68
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 146 1e-35
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 30 1.7
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 29 2.2
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 29 3.9
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 5.1
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 254 bits (623), Expect = 3e-68
Identities = 123/174 (70%), Positives = 142/174 (81%), Gaps = 1/174 (0%)
Frame = -1
Query: 562 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 383
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 382 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 203
+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125
Query: 202 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD-APAKKKLSQEK 44
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++ PTDD AP KK S+ K
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRK 177
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 146 bits (354), Expect = 1e-35
Identities = 91/174 (52%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Frame = -1
Query: 562 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 383
YSR P+N KSCKARGS+LRVHFKNT+E A M LR +P RR
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46
Query: 382 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 203
+ + K+ + L LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 47 QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97
Query: 202 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDD-APAKKKLSQEK 44
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++ PTDD AP KK S+ K
Sbjct: 98 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRK 149
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +2
Query: 299 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLSDC 469
E FG G ++ C S + + + ++ T +++ VF + +ER +
Sbjct: 30 ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89
Query: 470 HCGLICVLKVNTEV*TTSFAGFRRVIR-LPRVTTHYYFSQEKISIH 604
CG +CV + +V F GF+ + L RV H F+Q + H
Sbjct: 90 MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRH-GFNQSALRTH 134
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +2
Query: 389 TEWN---TLFLFNHVF--EVTNSTTERHLSDCHCGLICVLKVNTEV*TTSFAGFRRVIR- 550
T W T +++ VF + +ER + CG +CV + +V F GF+ +
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80
Query: 551 LPRVTTHYYFSQEKISIH 604
L RV H F+Q + H
Sbjct: 81 LDRVLRH-GFNQSALRTH 97
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 377 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 502
AV A W L +F+ + FE+ NS + S CHC +C +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = -1
Query: 325 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 164
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 163 NPYMSSPCHIEVCLSER 113
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +1
Query: 136 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 264
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,029
Number of Sequences: 27780
Number of extensions: 317765
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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