Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_L04
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 184 1e-47
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 184 1e-47
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 124 8e-30
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 92 7e-20
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 2e-05
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 7.0
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 9.2
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 184 bits (448), Expect = 1e-47
Identities = 83/133 (62%), Positives = 99/133 (74%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +K
Sbjct: 710 RRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIK 769
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLK 278
AYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLK
Sbjct: 770 AYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLK 829
Query: 277 EGLPDLTQYLDKL 239
E +PD T+Y D+L
Sbjct: 830 ENVPDYTEYYDRL 842
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 184 bits (448), Expect = 1e-47
Identities = 83/133 (62%), Positives = 99/133 (74%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +K
Sbjct: 710 RRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIK 769
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLK 278
AYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLK
Sbjct: 770 AYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLK 829
Query: 277 EGLPDLTQYLDKL 239
E +PD T+Y D+L
Sbjct: 830 ENVPDYTEYYDRL 842
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 124 bits (300), Expect = 8e-30
Identities = 65/144 (45%), Positives = 90/144 (62%), Gaps = 12/144 (8%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV ++ G+P+++V+
Sbjct: 826 RRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVR 885
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP------------YN 314
A +PV +S GF DLR +T GQA Q VFDHWQV+PGDP + KP +
Sbjct: 886 ALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARD 945
Query: 313 VVQETRKRKGLKEGLPDLTQYLDK 242
+ +TR+RKGL E + T+Y D+
Sbjct: 946 FLIKTRRRKGLVEDV-STTRYFDQ 968
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 91.9 bits (218), Expect = 7e-20
Identities = 39/87 (44%), Positives = 57/87 (65%)
Frame = -2
Query: 601 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 422
PRLM +Y C++Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF
Sbjct: 860 PRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFA 919
Query: 421 ADLRSNTGGQAFPQCVFDHWQVLPGDP 341
++ T G A+PQ +F +++L +P
Sbjct: 920 VEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -2
Query: 613 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 434
L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 433 FGFTADLRSNTGGQ 392
F +++D+R+ T G+
Sbjct: 726 FSYSSDIRALTKGK 739
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 367 HWQVLPGDPCEPQSKPYNVVQETRKRK 287
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 426 LLPICVPTPADRPSRSAYSTIGRS 355
+LP+ + TPA P + YS G S
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -1
Query: 422 CRFAFQHRRTGL----PAVR-IRPLAGPPWRPVRTSEQALQRCTGNEKEERIEGR 273
CRF + H + L PA R + WRPV E + NE+++R + R
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKER 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,106
Number of Sequences: 5004
Number of extensions: 51545
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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