Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_L04
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 241 4e-64
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 241 4e-64
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 120 9e-28
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 120 9e-28
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.043
Z82055-6|CAB04851.1| 365|Caenorhabditis elegans Hypothetical pr... 34 0.099
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 3.7
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 241 bits (589), Expect = 4e-64
Identities = 109/133 (81%), Positives = 117/133 (87%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RR YA LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VK
Sbjct: 720 RRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVK 779
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLK 278
AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLK
Sbjct: 780 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLK 839
Query: 277 EGLPDLTQYLDKL 239
EG+P L YLDK+
Sbjct: 840 EGVPALDNYLDKM 852
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 241 bits (589), Expect = 4e-64
Identities = 109/133 (81%), Positives = 117/133 (87%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RR YA LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VK
Sbjct: 720 RRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVK 779
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLK 278
AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLK
Sbjct: 780 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLK 839
Query: 277 EGLPDLTQYLDKL 239
EG+P L YLDK+
Sbjct: 840 EGVPALDNYLDKM 852
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 120 bits (289), Expect = 9e-28
Identities = 60/133 (45%), Positives = 80/133 (60%), Gaps = 12/133 (9%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV ++ + G+PM+ +
Sbjct: 817 RRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTIS 876
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---N 314
AY+PV +SFGF DLR +T GQAF F HWQ++PGDP + Q P+
Sbjct: 877 AYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLARE 936
Query: 313 VVQETRKRKGLKE 275
+ +TR+RKGL E
Sbjct: 937 FMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 120 bits (289), Expect = 9e-28
Identities = 60/133 (45%), Positives = 80/133 (60%), Gaps = 12/133 (9%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 458
RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV ++ + G+PM+ +
Sbjct: 692 RRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTIS 751
Query: 457 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---N 314
AY+PV +SFGF DLR +T GQAF F HWQ++PGDP + Q P+
Sbjct: 752 AYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLARE 811
Query: 313 VVQETRKRKGLKE 275
+ +TR+RKGL E
Sbjct: 812 FMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = -2
Query: 598 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 419
RL+ +Y C + A+G ++ VL++R+ V E T +F V + +PV ESF F
Sbjct: 753 RLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCD 812
Query: 418 DLRSNTGGQAFPQCVFDHWQVLPGDP 341
LR T G A Q F HWQV+ DP
Sbjct: 813 QLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -2
Query: 505 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 341
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 595 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 416
L+EP+ E P G + L +R + G I +A P+++ FG+T++
Sbjct: 642 LLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSE 699
Query: 415 LRSNTGGQ 392
LRS T G+
Sbjct: 700 LRSLTEGK 707
>Z82055-6|CAB04851.1| 365|Caenorhabditis elegans Hypothetical
protein T26H2.6 protein.
Length = 365
Score = 33.9 bits (74), Expect = 0.099
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = -1
Query: 323 ALQRCTGNEKEERIE-----GRSPRLNSIFGQIVNYIVKAN*NTYLYGKRFT-----HVY 174
A++ NEK ER+ G + LNS+FG +V I+ TY + T H+Y
Sbjct: 188 AVEYFVRNEKNERVLNYLSIGTALTLNSVFGAMVIVIIYCGVKTYKVTHKTTSHLSSHMY 247
Query: 173 FQQHMFRIMLKQT 135
Q+ +F +L QT
Sbjct: 248 IQKQLFTALLVQT 260
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 350 REDLPMVEYALREGLSAGVGTQIGSKTERLID 445
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 637 RRCLYACXLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVFEESQVAGTPMFIV 461
++C+ + + L EPV +I+ + I L RRR H T + +
Sbjct: 578 QKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFEHSDATESTEIRRI 637
Query: 460 KAYLPVNESFGFTADLRSNTGG 395
A LP++E+ + +R+ T G
Sbjct: 638 CAILPLSETENLSKTVRTLTSG 659
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,573
Number of Sequences: 27780
Number of extensions: 306535
Number of successful extensions: 747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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