Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_L03
         (453 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   230   8e-61
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   215   2e-56
U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.      29   2.2  
BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p pro...    29   2.2  
BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p pro...    29   2.2  
AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB...    29   2.2  
AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA...    29   2.2  
Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger...    29   2.9  
BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p pro...    29   2.9  
AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB...    29   2.9  
AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA...    29   2.9  
BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p pro...    28   6.8  
AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p pro...    28   6.8  
AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA...    28   6.8  
AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA...    28   6.8  
AY113597-1|AAM29602.1|  126|Drosophila melanogaster RH47776p pro...    27   8.9  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  230 bits (562), Expect = 8e-61
 Identities = 110/117 (94%), Positives = 113/117 (96%)
 Frame = -3

Query: 406 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 227
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60

Query: 226 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 56
            VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI
Sbjct: 61  FVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 117



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -1

Query: 51  GPVAKECADLWPRIASN 1
           GPVAKECADLWPRIASN
Sbjct: 119 GPVAKECADLWPRIASN 135


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  215 bits (526), Expect = 2e-56
 Identities = 104/117 (88%), Positives = 107/117 (91%)
 Frame = -3

Query: 406 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 227
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV GI+GRLNRLPAAG GDM
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDM 60

Query: 226 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 56
            VATVKKGKPELRKKV      RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI
Sbjct: 61  FVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 117



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -1

Query: 51  GPVAKECADLWPRIASN 1
           GPVAKECADLWPRIASN
Sbjct: 119 GPVAKECADLWPRIASN 135


>U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 102 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 272
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p
           protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 102 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 272
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307


>BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p
           protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 102 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 272
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB,
           isoform B protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 102 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 272
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA,
           isoform A protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 102 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 272
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger
           protein protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 160 RQRKPFRRRDGVFIYFEDN 104
           R+R+P R+RDG F Y  DN
Sbjct: 72  RRRRPVRKRDGTFNYSADN 90


>BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p
           protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 160 RQRKPFRRRDGVFIYFEDN 104
           R+R+P R+RDG F Y  DN
Sbjct: 66  RRRRPVRKRDGTFNYSADN 84


>AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB,
           isoform B protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 160 RQRKPFRRRDGVFIYFEDN 104
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


>AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA,
           isoform A protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 160 RQRKPFRRRDGVFIYFEDN 104
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


>BT023778-1|AAZ41787.1| 2016|Drosophila melanogaster LD21067p protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 222  TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 347
            TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052


>AY128444-1|AAM75037.1| 1332|Drosophila melanogaster LD21041p
           protein.
          Length = 1332

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 222 TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 347
           TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 327 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 368


>AE014134-1407|AAF52607.1| 2016|Drosophila melanogaster CG8552-PA
            protein.
          Length = 2016

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 222  TIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTG 347
            TI++P P   S      IP T  +     P  SA+L+ AP G
Sbjct: 1011 TILTPAPDTTSTLFANNIPTTTPSIPDIVPTTSAELVDAPPG 1052


>AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA
            protein.
          Length = 1283

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 413  QQNV*ERTWWFRGSEIPYLPGSPSGSSNQLRRQHR--GKESVCDRCPRYQRSPE 258
            Q++V +R      S+ P +PGS   SS  LR +HR   K S+  +   Y   PE
Sbjct: 920  QEHVCKRKSIEASSKPPEMPGSIGSSSEYLRPRHRLVTKWSLTSQSKPYNSRPE 973


>AY113597-1|AAM29602.1|  126|Drosophila melanogaster RH47776p
           protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 311 RGKESVCDRCPRYQRSPEQTAGGRF-RGHDCGHSQKG 204
           R  ES  D C RY R+  Q  G RF RG  C     G
Sbjct: 32  RSGESRGDECSRYSRTRCQRTGHRFRRGGRCHRQATG 68


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,009,795
Number of Sequences: 53049
Number of extensions: 527288
Number of successful extensions: 2019
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2019
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)