Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_L02
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-3|AAA91263.1| 555|Caenorhabditis elegans Hypothetical pr... 126 2e-29
AM748820-1|CAO72174.1| 555|Caenorhabditis elegans hexosaminidas... 126 2e-29
AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical ... 35 0.054
AL031627-12|CAA20963.2| 305|Caenorhabditis elegans Hypothetical... 29 2.7
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 29 3.5
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41107-6|AAC71165.3| 340|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 29 3.5
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 29 3.5
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 29 3.5
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 29 3.5
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 29 3.5
Z35595-10|CAA84634.2| 387|Caenorhabditis elegans Hypothetical p... 29 4.7
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 28 6.2
AF125451-6|AAD12825.1| 554|Caenorhabditis elegans Hypothetical ... 28 6.2
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 28 6.2
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 28 6.2
U41532-1|AAF99904.3| 370|Caenorhabditis elegans Hypothetical pr... 28 8.2
>U50199-3|AAA91263.1| 555|Caenorhabditis elegans Hypothetical protein
T14F9.3 protein.
Length = 555
Score = 126 bits (303), Expect = 2e-29
Identities = 78/241 (32%), Positives = 126/241 (52%), Gaps = 22/241 (9%)
Frame = -3
Query: 751 IREVQNXFPDRYYHVGGDEVD---LXXWQSNPEXKEYMKQHNLTANGV---HAMFMK--E 596
+ EV FPD++ H+GGDEV + W+ N + +++M++ + V + F K +
Sbjct: 307 LEEVTETFPDQFLHLGGDEVSDYIVECWERNKKIRKFMEEKGFGNDTVLLENYFFEKLYK 366
Query: 595 VIGRVKKTTVPIVWQEVYDEKVPISKDTLIQVWK---YKWIDEMIK-ILNSGHKVVFSSS 428
++ +K PI WQEV+D +P + +I +WK ++ I E +K I + V+ S+
Sbjct: 367 IVENLKLKRKPIFWQEVFDNNIP-DPNAVIHIWKGNTHEEIYEQVKNITSQNFPVIVSAC 425
Query: 427 WYLDYLNF--NW-NSFYGDDPR--LMVYQKKKN-----ARLENIVGGEACMWGEMADDTN 278
WYL+Y+ + +W + G P Y N A+ E + GG A +WGE+ D+TN
Sbjct: 426 WYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTNFNGTVAQKELVWGGIAAIWGELVDNTN 485
Query: 277 VISRTWPRTSAVAERLWSGLDYKHPPKDPVTIHVRQRIEEHTCRMLRRGIAAEPPNGPGF 98
+ +R WPR SA AERLWS + +D R+ E CR++ RG +P N P +
Sbjct: 486 IEARLWPRASAAAERLWSPAEKTQRAED-----AWPRMHELRCRLVSRGYRIQPNNNPDY 540
Query: 97 C 95
C
Sbjct: 541 C 541
>AM748820-1|CAO72174.1| 555|Caenorhabditis elegans hexosaminidase
protein.
Length = 555
Score = 126 bits (303), Expect = 2e-29
Identities = 78/241 (32%), Positives = 126/241 (52%), Gaps = 22/241 (9%)
Frame = -3
Query: 751 IREVQNXFPDRYYHVGGDEVD---LXXWQSNPEXKEYMKQHNLTANGV---HAMFMK--E 596
+ EV FPD++ H+GGDEV + W+ N + +++M++ + V + F K +
Sbjct: 307 LEEVTETFPDQFLHLGGDEVSDYIVECWERNKKIRKFMEEKGFGNDTVLLENYFFEKLYK 366
Query: 595 VIGRVKKTTVPIVWQEVYDEKVPISKDTLIQVWK---YKWIDEMIK-ILNSGHKVVFSSS 428
++ +K PI WQEV+D +P + +I +WK ++ I E +K I + V+ S+
Sbjct: 367 IVENLKLKRKPIFWQEVFDNNIP-DPNAVIHIWKGNTHEEIYEQVKNITSQNFPVIVSAC 425
Query: 427 WYLDYLNF--NW-NSFYGDDPR--LMVYQKKKN-----ARLENIVGGEACMWGEMADDTN 278
WYL+Y+ + +W + G P Y N A+ E + GG A +WGE+ D+TN
Sbjct: 426 WYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTNFNGTVAQKELVWGGIAAIWGELVDNTN 485
Query: 277 VISRTWPRTSAVAERLWSGLDYKHPPKDPVTIHVRQRIEEHTCRMLRRGIAAEPPNGPGF 98
+ +R WPR SA AERLWS + +D R+ E CR++ RG +P N P +
Sbjct: 486 IEARLWPRASAAAERLWSPAEKTQRAED-----AWPRMHELRCRLVSRGYRIQPNNNPDY 540
Query: 97 C 95
C
Sbjct: 541 C 541
>AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical
protein F56C3.2 protein.
Length = 457
Score = 35.1 bits (77), Expect = 0.054
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = -3
Query: 634 LTANGVHAMFMKEVIGRVKKTTVP-IVWQEVYDEKVPISKDTLIQVWKYKWIDEMIKILN 458
++ +G+ M E++ VK T+ IV Q+ YDE I ++Q+ ++K+ E++ N
Sbjct: 294 ISIDGLEECQMAEMLSCVKPRTLEKIVLQKNYDENQTIELKEIVQLEQWKYAKELVTEFN 353
Query: 457 SGHKVVFSSSWYLDYLNFN 401
G V Y DY +F+
Sbjct: 354 DGAIAV----RYQDYCHFD 368
>AL031627-12|CAA20963.2| 305|Caenorhabditis elegans Hypothetical
protein Y102A5C.22 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 496 KYKWIDEMIKILNSGHKVVFSSSWYLDYLNFN 401
KY W E S V + SWY D+L FN
Sbjct: 146 KYSWSPEFWLFAFSTTPVCLTISWYADFLKFN 177
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 440 NDFVTR----I*NLYHFINPFVLPNLYESVLRNWH 532
ND +TR + +LY F N LP L ES+ R+WH
Sbjct: 335 NDKITRLLANVSSLYQFHNTHFLPQLLESI-RDWH 368
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 440 NDFVTR----I*NLYHFINPFVLPNLYESVLRNWH 532
ND +TR + +LY F N LP L ES+ R+WH
Sbjct: 335 NDKITRLLANVSSLYQFHNTHFLPQLLESI-RDWH 368
>U41107-6|AAC71165.3| 340|Caenorhabditis elegans Hypothetical
protein F55C12.6 protein.
Length = 340
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 658 KEYMKQHNLTANGVH--AMFMKEVIGR--VKKTTVPIVWQEVYDEKVPISK 518
+E MK N+ A VH F + GR + T I + E+YD KVPI K
Sbjct: 129 EERMKHQNMLACNVHWSQNFWLKATGRSDIGACTYYISYYELYDFKVPIPK 179
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 440 NDFVTR----I*NLYHFINPFVLPNLYESVLRNWH 532
ND +TR + +LY F N LP L ES+ R+WH
Sbjct: 335 NDKITRLLANVSSLYQFHNTHFLPQLLESI-RDWH 368
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 440 NDFVTR----I*NLYHFINPFVLPNLYESVLRNWH 532
ND +TR + +LY F N LP L ES+ R+WH
Sbjct: 335 NDKITRLLANVSSLYQFHNTHFLPQLLESI-RDWH 368
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 506 YESVLRNWHFFIVHFLPNYWNCSFLHSANN 595
Y V R W F + H + N C F+++ NN
Sbjct: 478 YGGVAREWFFLLSHEVLNPMYCLFMYAGNN 507
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 506 YESVLRNWHFFIVHFLPNYWNCSFLHSANN 595
Y V R W F + H + N C F+++ NN
Sbjct: 480 YGGVAREWFFLLSHEVLNPMYCLFMYAGNN 509
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 440 NDFVTR----I*NLYHFINPFVLPNLYESVLRNWH 532
ND +TR + +LY F N LP L ES+ R+WH
Sbjct: 335 NDKITRLLANVSSLYQFHNTHFLPQLLESI-RDWH 368
>Z35595-10|CAA84634.2| 387|Caenorhabditis elegans Hypothetical
protein C01G6.3 protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 424 YLDYLNFNWNS--FYGDDPRLMVYQKKKNARLENI 326
YLDY ++NWNS F D L + K N L+++
Sbjct: 108 YLDYFDYNWNSLRFERDLKSLFLENKINNPFLDSV 142
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/77 (20%), Positives = 32/77 (41%)
Frame = -3
Query: 529 PISKDTLIQVWKYKWIDEMIKILNSGHKVVFSSSWYLDYLNFNWNSFYGDDPRLMVYQKK 350
PIS+++ V K + + + V WYL+ +W DDPR +
Sbjct: 209 PISRESHTAVIYEKDSISRMVVYGGMNGVRLGDLWYLNLNTLHWTEIKFDDPRTGIPPMP 268
Query: 349 KNARLENIVGGEACMWG 299
++ ++G + ++G
Sbjct: 269 RSLHSSVLIGDKMFVYG 285
>AF125451-6|AAD12825.1| 554|Caenorhabditis elegans Hypothetical
protein Y37E11B.5 protein.
Length = 554
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 248 CCS*TIVVRTRLQTPAKRSCHYSRTTTYRGTHLPDATTWYSR*TSQR 108
CC T+ +RT ++ ++ Y H PD T++ R QR
Sbjct: 330 CCPLTVKIRTGMKEGVLKAPEYVEHMKKHSWHTPDLITFHPRSKEQR 376
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/77 (20%), Positives = 32/77 (41%)
Frame = -3
Query: 529 PISKDTLIQVWKYKWIDEMIKILNSGHKVVFSSSWYLDYLNFNWNSFYGDDPRLMVYQKK 350
PIS+++ V K + + + V WYL+ +W DDPR +
Sbjct: 209 PISRESHTAVIYEKDSISRMVVYGGMNGVRLGDLWYLNLNTLHWTEIKFDDPRTGIPPMP 268
Query: 349 KNARLENIVGGEACMWG 299
++ ++G + ++G
Sbjct: 269 RSLHSSVLIGDKMFVYG 285
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 613 AMFMKEVIGRVKKTTVPIVWQEVYDEKVPISKDTLIQVWKYKWIDEMIKILNSGHKVVFS 434
++F+ ++ +P+ W E E VP Q + YKWI E ++ ++ H
Sbjct: 1257 SIFLSIIVSNNDTVEIPLCWFE-NQEHVPAMMIAAKQPF-YKWIVEAPEMKSNAHHFGSF 1314
Query: 433 SSWYLD 416
S+Y+D
Sbjct: 1315 LSYYVD 1320
>U41532-1|AAF99904.3| 370|Caenorhabditis elegans Hypothetical
protein F11D5.5 protein.
Length = 370
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 465 IFIISSIHLYFQTCMRVSLEIGTF---SSYTSCQTIGTVVFFTRPITS 599
IF+I+++ YF+TC+ SLEI + SS+ + T V F +++
Sbjct: 184 IFVIAALLQYFRTCIIFSLEITIYIFGSSWLTRITYNMVEFLAALVSA 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,404,343
Number of Sequences: 27780
Number of extensions: 381801
Number of successful extensions: 994
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -