Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_L01
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 126 2e-29
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 124 9e-29
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 118 3e-27
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 118 3e-27
10_08_1046 + 22542074-22544749,22544837-22545544 30 2.0
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 29 3.4
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 126 bits (304), Expect = 2e-29
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = -1
Query: 334 GLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDS 155
GL ++SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNIIHGSD
Sbjct: 104 GLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDG 163
Query: 154 VESAKKEIGLWFTDKEVVGWTPANENWVY 68
E+AK EIGLWF +E+V +T E W+Y
Sbjct: 164 PETAKAEIGLWFEPRELVSYTSNEEKWIY 192
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = -3
Query: 521 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 342
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPF
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 101
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 124 bits (298), Expect = 9e-29
Identities = 53/90 (58%), Positives = 68/90 (75%)
Frame = -1
Query: 334 GLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDS 155
GLV+Y+ SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDS
Sbjct: 62 GLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDS 121
Query: 154 VESAKKEIGLWFTDKEVVGWTPANENWVYE 65
VE+A+KEI LWF + + W W+YE
Sbjct: 122 VENARKEIALWFPE-GIAEWRSNQHPWIYE 150
Score = 77.0 bits (181), Expect = 1e-14
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = -3
Query: 509 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 342
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PF
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPF 59
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 118 bits (285), Expect = 3e-27
Identities = 48/91 (52%), Positives = 67/91 (73%)
Frame = -1
Query: 337 PGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSD 158
PGL++Y++SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSD
Sbjct: 60 PGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSD 119
Query: 157 SVESAKKEIGLWFTDKEVVGWTPANENWVYE 65
S ++ K+EI LWF + E+ W W+ E
Sbjct: 120 SPDNGKREIALWFKEGELCEWESVLTPWLVE 150
Score = 81.0 bits (191), Expect = 8e-16
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = -3
Query: 509 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFXP 336
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PF P
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFP 60
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 118 bits (285), Expect = 3e-27
Identities = 52/91 (57%), Positives = 68/91 (74%)
Frame = -1
Query: 337 PGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSD 158
PGLV+Y+ SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSD
Sbjct: 59 PGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSD 118
Query: 157 SVESAKKEIGLWFTDKEVVGWTPANENWVYE 65
SV++ KKEI LWF + + W W+YE
Sbjct: 119 SVDNGKKEIALWFPE-GLAEWRSNLHPWIYE 148
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = -3
Query: 509 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFXP 336
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PF P
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFP 59
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -3
Query: 509 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFXPWS 330
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P +
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRPLT 253
Query: 329 SKV 321
K+
Sbjct: 254 RKL 256
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 355 HPGLSXPGLVKYMSSG 308
HPG + PG+VKY+S G
Sbjct: 209 HPGTTVPGMVKYVSGG 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,241
Number of Sequences: 37544
Number of extensions: 354909
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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