Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_K24
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 200 7e-52
11_01_0155 - 1287003-1287452 200 7e-52
03_06_0097 - 31632238-31632525,31633386-31633769 39 0.003
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.005
07_03_0227 - 15398371-15398925 29 2.2
06_03_0062 + 16116893-16117029,16117472-16117760 29 2.2
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.9
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 5.1
11_01_0523 - 4109070-4109984,4110532-4110936 28 6.8
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 6.8
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.8
01_06_0683 - 31173763-31174635,31175146-31175436 28 6.8
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 27 8.9
>12_01_0152 - 1168928-1169377
Length = 149
Score = 200 bits (488), Expect = 7e-52
Identities = 89/136 (65%), Positives = 112/136 (82%)
Frame = -2
Query: 492 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 313
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 312 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 133
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 132 PRRCEPKKFGGPGARA 85
PRRCEPKKFGG GARA
Sbjct: 127 PRRCEPKKFGGRGARA 142
>11_01_0155 - 1287003-1287452
Length = 149
Score = 200 bits (488), Expect = 7e-52
Identities = 89/136 (65%), Positives = 112/136 (82%)
Frame = -2
Query: 492 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 313
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 312 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 133
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 132 PRRCEPKKFGGPGARA 85
PRRCEPKKFGG GARA
Sbjct: 127 PRRCEPKKFGGRGARA 142
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 39.1 bits (87), Expect = 0.003
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Frame = -2
Query: 480 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 310
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 309 MVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 130
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 129 RRCEPKKFGGPGAR 88
R E KK G AR
Sbjct: 202 RIVERKKAGLKKAR 215
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -2
Query: 462 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 283
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 282 GGGHVAQVYAIRQAISKAL 226
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 342 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 452
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 387 MDARLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 485
+DARL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 368 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 270
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 388 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 474
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 282 GGGHVAQVYAIRQAISKALIAFY 214
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 500 RQDVSPSRPSKYSDVRKPPPQLRIAS 423
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 399 NGRPLDLVEPRLLQYKLQEPILLL 328
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = -3
Query: 485 PSRPSKYSDVRKPPPQLRIASVVMECCV*TGVHWTWLSPDCCSTNFRNLSFCSARKNSLW 306
PS+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQW 275
Query: 305 ST 300
T
Sbjct: 276 RT 277
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 208 FLIEGNQGL*NSLSDSVNLCYMTTTLDCHSDV 303
+LIEGN L N L D VN+ TT + + V
Sbjct: 332 YLIEGNMQLPNQLGDIVNVTDATTRRNLQNSV 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,722
Number of Sequences: 37544
Number of extensions: 350884
Number of successful extensions: 913
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -