Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K24
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 268  YMTTTLDCHSDVDHREFFLAEQKD 339
            ++TTT+DC +  ++ E  + +QK+
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +1

Query: 451 FLTSEYLDGLDGLT 492
           F++S +L+GL+GLT
Sbjct: 391 FVSSPFLNGLEGLT 404


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -1

Query: 196 SLKEGNQRHPSSIR*EFAGG*PASLRAQEVRWSRCPCLDTKKSYR 62
           +++E  Q H  S     + G PA+       +    CLD   S R
Sbjct: 609 TIQEPPQWHTRSTEKRVSAGTPAAFNISTTIYENQNCLDASSSRR 653


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 455 LRPNTWTAWMGSRLASCTAAILXXKAIHLN 544
           L P    +W+   +  CTA+IL   AI ++
Sbjct: 106 LGPMLCDSWVSLDILLCTASILSLCAISID 135


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 379  QVQWTPVYTQHSMTTLAIRNCGGGFLTSE 465
            Q+     YTQ+S+   A    G G ++ E
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEE 1071


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,581
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)