Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K23
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    30   1.5  
05_05_0260 + 23660883-23662070                                         28   5.9  
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537...    28   5.9  

>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 514 RCSSHGALS*LYGLTSHCTV*LRFSCFESVQGLPFLI-LNCPNTIDSLFLS 663
           +CSS   +  +Y  T HC+      CF  +Q  P+LI + CP   D L LS
Sbjct: 84  KCSSPINVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPE--DHLHLS 132


>05_05_0260 + 23660883-23662070
          Length = 395

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 274 ALNGRRLC---GLSRAFSFNGNRIGVPLNFPDFQFSGALYGLSAGFYVRDGLDF 426
           +L GR L    G SR++S N        N+PD +F+  +Y L  G   R+GL F
Sbjct: 305 SLGGRMLFVARGCSRSYSKN--------NYPDAEFNEGVYFLDDGRLYREGLSF 350


>02_05_0356 +
           28252154-28252897,28253171-28253377,28253473-28253710,
           28254853-28255220
          Length = 518

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 301 LSRAFSFNGNRIGVPLNFPDFQFSGALYGLSAGFYV 408
           L + F+F   R+G  +  P+  F+G L G S+ F V
Sbjct: 279 LDKIFAFLLRRLGFNIQIPEASFTGGLVGNSSPFAV 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,714
Number of Sequences: 37544
Number of extensions: 298069
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)