Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K23
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125347-1|BAC86140.1|  277|Homo sapiens protein ( Homo sapiens ...    32   1.6  
U86759-1|AAC51247.1|  580|Homo sapiens netrin-2 like protein pro...    30   8.6  
U86758-1|AAC51246.1|  580|Homo sapiens netrin-2 like protein pro...    30   8.6  

>AK125347-1|BAC86140.1|  277|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43357 fis, clone NT2RP7013795, weakly  similar
           to VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
          Length = 277

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 610 SPGRSQNS*SAIRRCSG*SGRTAS*ERRGSCTLRCSTSIPGRLPGNCVAG 461
           +PG S  S   +  C G SG T S      CT RCST  P R    C +G
Sbjct: 123 APGPSTRS---LESCGGCSGATHSSSTASRCTARCST--PPRTTAPCASG 167


>U86759-1|AAC51247.1|  580|Homo sapiens netrin-2 like protein
           protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = -1

Query: 664 SSGTGCRWCLGS*G*EMASPGRSQNS*SAIRRCS----G*SGRTAS*ERRGSCTLRCSTS 497
           ++G  C +C          PGR+ +   A R C     G +G+T + +  G C   C   
Sbjct: 345 TAGRHCHYCREG---FYRDPGRALSDRRACRACDCHPVGAAGKTCN-QTTGQCP--CKDG 398

Query: 496 IPGRLPGNCVAGYQKHRDP 440
           + G     C  G+Q+ R P
Sbjct: 399 VTGLTCNRCAPGFQQSRSP 417


>U86758-1|AAC51246.1|  580|Homo sapiens netrin-2 like protein
           protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = -1

Query: 664 SSGTGCRWCLGS*G*EMASPGRSQNS*SAIRRCS----G*SGRTAS*ERRGSCTLRCSTS 497
           ++G  C +C          PGR+ +   A R C     G +G+T + +  G C   C   
Sbjct: 345 TAGRHCHYCREG---FYRDPGRALSDRRACRACDCHPVGAAGKTCN-QTTGQCP--CKDG 398

Query: 496 IPGRLPGNCVAGYQKHRDP 440
           + G     C  G+Q+ R P
Sbjct: 399 VTGLTCNRCAPGFQQSRSP 417


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,100,586
Number of Sequences: 237096
Number of extensions: 1568572
Number of successful extensions: 3386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3368
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)