Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K23
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 474  IASPAIKSIATQPPVEEVKTVADVEASAKAVEGPAELEVGK 352
            ++SP    I+  PP+E    +       + V+G  EL  GK
Sbjct: 1224 VSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGK 1264


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 474  IASPAIKSIATQPPVEEVKTVADVEASAKAVEGPAELEVGK 352
            ++SP    I+  PP+E    +       + V+G  EL  GK
Sbjct: 1220 VSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGK 1260


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 125 KCLWCLLSHHRL 90
           KC W + S+HR+
Sbjct: 69  KCTWTITSYHRI 80


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 213 VQHLIHLKSAHHFQQPMFWQRFEW 284
           V  L+ L     F+  +FWQ++ W
Sbjct: 77  VSDLLFLILGLPFELSVFWQQYPW 100


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/41 (19%), Positives = 21/41 (51%)
 Frame = -3

Query: 629 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 507
           +++   K   + +++++     W++ P S  R  W+L + L
Sbjct: 57  MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/41 (19%), Positives = 21/41 (51%)
 Frame = -3

Query: 629 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 507
           +++   K   + +++++     W++ P S  R  W+L + L
Sbjct: 57  MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 346 LNFPDFQFSGALYGLSAGFYVRDGLDFFY 432
           +N  +FQ+   L+GLS      DG    Y
Sbjct: 228 INGFNFQWKDGLFGLSLSALQTDGYKILY 256


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKRN 576
           R+  GKP T S +LKR+
Sbjct: 134 RVLPGKPTTTSDELKRD 150


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/41 (19%), Positives = 21/41 (51%)
 Frame = -3

Query: 629 LRIRNGKPWTLSKQLKRN*TVQWLVRPYS*LRAPWELHLTL 507
           +++   K   + +++++     W++ P S  R  W+L + L
Sbjct: 57  MKLFGSKKALMKERIRQKAAGHWVIHPCSSFRFYWDLCMLL 97


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 626 RIRNGKPWTLSKQLKR 579
           R+  GKP T S +LKR
Sbjct: 134 RVLPGKPTTTSDELKR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,394
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 27
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)