Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_K16
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    27   1.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   4.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.3  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   6.3  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 271 CKCNQKDQL*STVLKYQLFLSSYQRKLLEFNNID-HRHCLKPL 146
           CK ++KDQ    +L+Y +       K L   N D + HC+K L
Sbjct: 233 CKNHKKDQTGKRMLRYYVHQRQRMLKYLRKVNFDRYVHCIKNL 275


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 257 KRSVIKHSSQVPVVPVFIP 201
           K++ I   SQ+PV+P F+P
Sbjct: 440 KQAAIDAYSQIPVIPFFLP 458


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 67  IKNNSSENSDRVYSPKHREPKLRF-FLSEVSNNVC 168
           +KNNS   +     P+ R   LR+ F  EVS  VC
Sbjct: 333 VKNNSVNIAQSFLEPQTRSTFLRYLFSDEVSVKVC 367


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 YYHPNSNDDNNMLNYKY 401
           Y+ PN +DD N LN K+
Sbjct: 513 YFFPNKSDDLNNLNEKF 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,029
Number of Sequences: 5004
Number of extensions: 33596
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)